After provision for the appointment of the fit, came provision for the elimination of the unfit. A second ordinance, issued in August, 1654, appointed local commissioners in every county to remove scandalous and inefficient ministers and schoolmasters within its limits. Amongst the reasons which justified ejection were included not merely immoral conduct or Popish and blasphemous opinions, but disaffection to the government and the use of the Prayer-book. In September, the work was completed by a third ordinance for the union of small and the division of large and populous parishes.

Cromwell’s speeches are full of expressions of satisfaction at the results that these ordinances produced. He was proud of the character of his clergy. “In the times of Episcopacy,” said he, “what pitiful certificates served to make a man a minister. If any man understood Latin or Greek, he was sure to be admitted.” But now, “neither Mr. parson nor doctor in the university hath been reckoned stamp enough by those that made these approbations, though I can say they have a great esteem for learning.” The rule with the Triers was, “that they must not admit a man unless they were able to discern something of the grace of God in him.”

He was equally proud of the comprehensiveness of the Church. There were “three sorts of godly men,” that is, three sects, to be provided for in it: the Presbyterians, the Independents, and the Baptists. The Triers were drawn impartially from all three bodies, and “though a man be of any of those three judgments, if he have the root of the matter in him he may be admitted.” Summing up the work of the Triers and Ejectors, he emphatically declared: “There hath not been such a service to England since the Christian religion was perfect in England.”

In the main, Cromwell’s satisfaction was justified. Both bodies of commissioners did the work they were charged to do with fidelity. Some good men were expelled merely for royalism or using the liturgy, but the bulk of those who lost their livings deserved their fate, and those admitted were generally fit for their office. The Presbyterian Richard Baxter, an opponent on principle of Cromwell and his works, felt bound to praise the commissioners:

“To give them their due, they did abundance of good to the Church. They saved many a congregation from ignorant, ungodly, drunken teachers. That sort of men that intended no more in the ministry than to say a sermon as readers say their common prayers, and so patch up a few good words together to talk the people asleep with on Sunday, and all the rest of the week go with them to the alehouse and harden them in sin; and that sort of ministers that either preached against a holy life, or preached as men that were never acquainted with it; all those that used the ministry but as a common trade to live by, and were never likely to convert a soul:—all these they usually rejected, and in their stead admitted of any that were able, serious preachers, and lived a godly life, of what tolerable opinion soever they were. So that though they were many of them somewhat partial for Independents, Separatists, Fifth Monarchy-men, and Anabaptists, and against the Prelatists and Arminians, yet so great was the benefit above the hurt to the Church, that many thousands of souls blessed God for the faithful ministers whom they let in.”

Outside the bounds of the national Church, the constitution promised liberty of worship to “all such as do profess faith in God by Jesus Christ.” Anglicanism and Catholicism, however, labelled Prelacy and Popery, and regarded as idolatrous or politically dangerous, were excepted by name from this promise. In practice, although the use of the liturgy had been prohibited since 1645, many orthodox Anglicans had contrived to retain their livings, sometimes using portions of the Prayer-book from memory, in other cases confining themselves to preaching and to the administration of the sacraments. Many ejected ministers gathered little congregations in private houses, and were not molested by the Government. The royalist insurrection of 1655 led to greater severity, and in October, 1655, Cromwell issued a proclamation prohibiting the employment of the ejected clergy as chaplains or schoolmasters. It was meant as a warning, rather than to be rigidly enforced, and the promise was made that any man whose “godliness and good affection to the present government” were capable of proof should be treated with tenderness. Congregations of Royalists continued to meet in London throughout the Protectorate, and the Government winked at their use of Anglican services and ceremonies. But whenever there was a new plot discovered, their meetings were liable to be interrupted by the soldiery.

The case of the Catholics was harder than that of the Anglicans, although their lot was less hard than it had been. In 1650, the acts imposing fines on recusants for not coming to church were repealed, and there were persistent rumours that the Independents were about to make proposals for their toleration. In June, 1654, a Catholic priest was executed in London for no crime except being a priest. Cromwell, it is said, wished to pardon him, but was prevented by the opposition of his Council. In 1656, Mazarin urged Cromwell to grant toleration to the Catholics.

“I cannot,” answered the Protector, “as to a public declaration of my sense on that point; although I believe that under my government your Eminency on behalf of the Catholics has less cause for complaint than under the Parliament. For I have of some and those very many had compassion, making a difference. I have plucked many out of the fire,—the raging fire of persecution, which did tyrannise over their consciences and encroach by arbitrariness of power over their estates. And herein it is my purpose, as soon as I can remove impediments and some weights that press me down, to make a further progress, and discharge my promise to your Eminence.”

The Protector’s purpose was never fulfilled. Public opinion in England was too hostile to the Catholics to permit of their legal toleration, and the same thing happened when Cromwell wished to readmit the Jews to England. In November, 1655, Manasseh Ben Israel, a learned Portuguese Jew, settled in Amsterdam as a physician, petitioned the Protector to allow the Jews to reside and trade in England, and to grant them the free exercise of their religion. Cromwell, who was personally in favour of their petition, called together a committee of divines, merchants, and lawyers to confer with the Council on the question. The Protector himself took part in the conferences. “I never heard a man speak so well,” said one of his hearers, but the divines feared for their religion and the merchants for their trade, so the legal toleration the Jews asked for was not granted. Cromwell, however, granted them leave to meet in private houses for devotion, and showed them such encouragement and favour that their resettlement in England really dates from the Protectorate.

The Protector’s tolerant nature showed itself again in his dealings with the Quakers. Under the Commonwealth, the Quakers were persecuted and imprisoned, not simply because their opinions were regarded as blasphemous, but because they were held dangerous to the public peace. Their attacks on the clergy and their misconduct and brawling in churches gave colour to these accusations. Under the Protectorate, this persecution continued, till it was mitigated by the intervention of the Protector and his Council. In 1654, George Fox had a long interview with the Protector. “I spake much to him,” writes Fox, “of truth; and a great discourse I had with him about religion, wherein he carried himself very moderately.” The earnestness and enthusiasm of Fox impressed Cromwell greatly. “As I spake, he would several times say, it was very good, and it was truth. And as I was turning to go away, he catches me by the hand, and with tears in his eyes, said: ‘Come again to my house; for if thou and I were but an hour of a day together we should be nearer one to the other’; adding, that he wished me no more ill than he did to his own soul.” Convinced that the Quakers were not inclined to “take up a carnal sword” against his government, the Protector ordered Fox to be set free, and in October, 1656, he released a number of imprisoned Quakers. Again in November, 1657, he issued a general circular to all justices in England and Wales, stating that though he was far from countenancing the mistaken practices or principles of the Quakers, yet as those proceeded “rather from a spirit of error than a malicious opposition to authority,” they were “to be pitied, and dealt with as persons under a strong delusion,” to be discharged from prison, and to be treated in the future with tenderness rather than severity.