His rival being thus disposed of, the command of the fleet was offered in 1666 to Rupert, in conjunction with the Duke of Albemarle. To this new colleague Rupert had no objections, and there was, happily, "great unanimity and consent between them." True, Rupert would fain have sailed in a separate ship, but, it being represented that this might cause confusion in orders, he yielded to the argument. Albemarle left much to Rupert's management, "declaring modestly, upon all occasions, that he was no seaman;" and this was doubtless very pleasing to the Prince, who loved to rule. As both Admirals were "men of great dexterity and indefatigable industry," the outlook was exceedingly favourable.[[29]]

The sailors welcomed Rupert gladly; and, on February 13, "several sea-captains who had served under Prince Rupert, invited him to dinner, and spoke cheerfully of going against the Dutch again together."[[30]] On May 25 they sailed from the Nore, with 58 ships and 9 fire-ships. Rupert was in excellent spirits and, reported his secretary, went "most cheerfully" on the expedition.[[31]]

Unfortunately the King and his Council committed at the outset a strategic blunder for which neither of the Admirals was responsible. It was rumoured that a French fleet was coming from Belle Isle, under the Duke of Beaufort, and Rupert was ordered to sail with 24 ships to intercept it before it could join with the Dutch. The sailors grumbled loudly at this separation. "Nothing was to be heard among the seamen but complaints about the dividing of the fleet, and the sending away Prince Rupert."[[32]] But orders had to be obeyed, and Rupert sailed away, leaving Albemarle with only 56 ships to meet De Ruyter's 85.

In the Prince's absence, Albemarle fell in with the Dutch in the Downs, and the famous four days' battle began, June 1st. The wind was with Albemarle, but he had only 35 ships well in hand, the rest straggling behind. With great ingenuity he made his attack so that only a portion of the Dutch fleet could engage with him, and the fight was continued, with immense gallantry and varying fortune, from 9 a.m till 10 p.m. On the second day the English returned in good order, but, though the Dutch were crowded and confused, Albemarle was too weak to press his advantage. Each side lost about three ships. On the third day Albemarle held off, hoping for Rupert's arrival. This did not take place till late in the afternoon, and the blame of this long delay was due to home authorities. As soon as firing was heard in the Downs, Coventry had signed an order for Rupert's recall, and sent it to Arlington, expecting that he would at once despatch it. But Arlington happened to be in bed, and his servants dared not wake him; "a tenderness not accostumed to be in the family of a secretary," says Clarendon, with just severity.[[33]] Consequently Rupert never received the order until he himself had heard the noise of battle, and turned back to Albemarle's aid, on his own responsibility. A contrary wind delayed him yet longer, and it was 3 p.m on Sunday, June 3, before he reached the scene of action, where he was received by the sailors with shouts of joy. In the confusion of joining the fleets, the "Royal Prince" ran aground, and was burnt by the Dutch; a misfortune "which touched every heart, for she was the best ship ever built, and like a castle at sea."[[34]] The fight was not resumed until the next morning. All order had been lost, and both sides were in confusion. There was two hours' furious firing, and the Dutch centre passed right through the English centre, where the fight was very hot. Finally the exhausted Dutch suffered the English to draw away, and Albemarle, rallying his scattered fleet, beat an honourable retreat.[[35]]

Rupert's arrival had not turned defeat into victory, but it had saved Albemarle from imminent disaster. The losses of the English had been extremely heavy, but those of the Dutch had been also severe, and all the moral prestige belonged to the English, who had sustained the fight against great odds, with extraordinary gallantry. The credit was due, in a great measure, to the skill and valour of the admirals, but not a little, also, to the good discipline and seamanship of the men and officers. Dryden who celebrated the event in a long poem, while giving the admirals their due, did not forget the rest.

"Thousands there were, in darker fame shall dwell,
"Whose deeds some nobler poem shall adorn,
"But, though to me unknown, they sure fought well,
"Whom Rupert led, and who were British born."[[36]]

As before, Rupert's admirers thought that "the good prince" had not received his due in the official reports of the action. His secretary, James Hayes, wrote to Arlington's secretary to expostulate. "Give me leave to suggest that, since in the Dutch gazette those lying words speak dishonourably of the Prince, it will offer an occasion of a word or two in yours, more to his merit; in whom I did indeed discover so extraordinary courage, conduct and presence of mind in the midst of all the showers of cannon bullet, that higher I think cannot be imagined of any man that ever fought. I observed him with astonishment all that day."[[37]] This letter produced the following note, added to the official gazette: "The writer of this letter could not think fit to mingle in his relations any expressions of His Royal Highness's personal behaviour, because it was prepared for his own sight. But it is most certain that never any Prince, or it may be truly said, any private person, was, in an action of war, exposed to more danger from the beginning to the end of it. His conduct and presence of mind equalling his fearless courage, and carrying him to change his ship three times, setting up his Royal standard in each of them, to animate his own men and brave the enemy."[[38]] For this tribute Hayes returned grateful thanks. "You have done right to a brave Prince, whose worth will endure praise, though I find his ears are too modest to hear his own."[[39]]

Rupert was far more engaged with his smouldering wrath against the Commissioners of the Navy, than in considering what the gazette did, or did not say of himself. A month earlier he had written to the King that "unless some course" were taken with the victualler—viz. Pepys—the whole fleet would be ruined.[[40]] Now, when the fleet came in to refit, the first thing he did on meeting the King, was to reiterate his complaints. "Which," wrote Pepys, "I am troubled at, and do fear may in violence break out upon this office some time or other, and we shall not be able to carry on the business."[[41]] But Rupert's time on shore was short, and the storm was deferred.

By July 22 the fleet was again at sea. Severely as it had suffered, the refitting had been conducted with remarkable celerity, and the King and the Duke of York themselves showed such an active interest in the preparations, that Rupert swore that they were the best officers in the navy. The fleet went out "in very good heart," Rupert's ship boasting "a dancing-master and two men who feign themselves mad and make very good sport to a bag-pipe."[[42]] Unluckily, the very day after putting to sea, came a violent thunderstorm, which damaged the ships so severely that the Prince declared himself more afraid of the weather than of the enemy.

On July 25 they fell in with the Dutch fleet, commanded by Tromp and De Ruyter, off the North Foreland. The Dutch line was uneven, the van and centre crowded; the English line presented a remarkable regularity. The fight began at 10 a.m., and Tromp immediately engaged the English rear, carried it away with him, out of sight, and was eventually shattered by it. This independent action on the part of his subordinate, greatly embarrassed De Ruyter. His van was speedily over-matched, and at 4 p.m. his centre gave way. At night the English renewed the attack in a desultory fashion, and Rupert appears to have run some danger, for he afterwards promoted a gunner who had saved his life at the risk of his own.[[43]]