In 1833 Padre Viader closed his missionary service of nearly forty years in California by leaving the country, and Padre Francisco García Diego, the prefect of the Zacatecan friars, became his successor. Diego afterwards became the first bishop of California.
In July, 1839, a party called Yozcolos, doubtless after their leader, attacked the neophytes guarding the Santa Clara wheat-fields, killing one of them. The attackers were pursued, and their leader slain, and the placing of his head on a pole seemed to act as a deterrent of further acts for awhile.
In December of the same year Prado Mesa made an expedition against gentile thieves in the region of the Stanislaus River. He was surprised by the foe, three of his men killed, and he and six others wounded, besides losing a number of his weapons. This Indian success caused great alarm, and a regular patrol was organized to operate between San José and San Juan Missions for the protection of the ranches. This uprising of the Indians was almost inevitable. Deprived of their maintenance at the Missions, they were practically thrown on their own resources, and in many cases this left them a prey to the evil leadership of desperate men of their own class.
Santa Clara was one of the Missions immediately affected by the decree of Micheltorena, of March 29, 1843, requiring that the padres reassume the management of the temporalities. They set to work to gather up what fragments they could find, but the flocks and herds were "lent" where they could not be recovered, and one flock of 4000 sheep--the padre says 6000--were taken by M.J. Vallejo, "legally, in aid of the government."
Pio Pico's decree of June 5, 1845, affected Santa Clara. Andrés Pico made a valuation of the property at $16,173. There were then 130 ex-neophytes, the live-stock had dwindled down to 430 cattle, 215 horses, and 809 sheep. The padre found it necessary to write a sharp letter to the alcalde of San José on the grog-shops of that pueblo, which encouraged drinking among his Indians to such extent that they were completely demoralized.
March 19, 1851, the parish priest, who was a cultivated and learned Jesuit, and who had prepared the way, succeeded in having the Santa Clara College established in the old Mission buildings. On the 28th of April, 1855, it was chartered with all the rights and privileges of a university. In due time the college grew to large proportions, and it was found imperative either to remove the old Mission structure completely, or renovate it out of all recognition. This latter was done, so that but little of the old church remains.
In restoring it in 1861-1862 the nave was allowed to remain, but in 1885 it was found necessary to remove it. Its walls were five feet thick. The adobe bricks were thrown out upon the plaza behind the cross.
The present occupation of Santa Clara as a university as well as a church necessitated the adaptation of the old cloisters to meet the modern conditions. Therefore the casual visitor would scarcely notice that the reception-room into which he is ushered is a part of the old cloisters. The walls are about three feet thick, and are of adobe. In the garden the beams of the cloister roofs are to be seen.
The old Mission vineyard, where the grapes used to thrive, is now converted into a garden. A number of the old olive trees still remain. Of the three original bells of the Mission, two still call the faithful to worship. One was broken and had to be recast in San Francisco.
On the altar, there are angels with flambeaux in their hands, of wooden carving. These are deemed the work of the Indians. There are also several old statues of the saints, including San Joaquin, Santa Ana, San Juan Capistrano, and Santa Colette. In the sodality chapel, also, there are statues of San Francisco and San Antonio. The altar rail of the restored Santa Clara church was made from the beams of the old Mission. These were of redwood, secured from the Santa Cruz mountains, and, I believe, are the earliest specimens of redwood used for lumber in California The rich natural coloring and the beauty of the grain and texture have improved with the years The old octagonal pulpit, though not now used is restored and honored, standing upon a modern pedestal.