The Reptilia of the Palæontologist is therefore a vast and provisional group, ever acquiring new characters, to which no diagnosis can be applied. And although certain empirical characters have served to allocate the specimens in their several orders, in general with sufficient accuracy, yet from the imperfect preservation of some of the remains, or the imperfect extent to which their structures are known, and the want of recognised canons by which to measure their relative values, it has not been possible to discuss the relations of the several orders to each other or with the larger groups on which some of them impinge.

Classifications represent more or less faithfully the gradational increase in the sum of the characters of an organism, as well as the increase in importance that those character severally attain. Thus gathering, so far as may be, from the chaos of individuals, a common plan of structures on which the genus, order, or class is moulded from a less specialized group of organs. The fundamental structures of a vertebrate animal, so far as their persistent importance can be measured, are, those connected with

I.Perpetuating the race.
II.Construction of the brain.
III.Circulation and oxidation of the blood.
IV.Locomotion, i.e. skeleton, muscles, &c.

And these characteristics are for the most part so interlinked, that it becomes difficult to assign to one order of animals a relative superiority over another order; since when a single set of organs is prominently developed in one group it often happens that another set of organs has a like pre-eminence in an allied group. Thus among reptiles it might be considered that

Crocodiles have the best hearts, and
Turtles the best lungs.

And since these structures in their functions severally modify and determine the use of other structures, the meaning that terms like Crocodilian and Chelonian really have is that they represent the aspect of Reptilian organization when seen through the specialization of respiration, or circulation of the blood. The soft parts thus determining the nutrition and function of the muscles and skeleton, anatomists in examining the bones of extinct animals are accustomed to reverse the order of their inferences, and infer from modifications of the skeleton what had been the characters of the soft and more vital structures.

On the presumed accuracy of this method of research rest many results of Comparative Anatomy. But since the shapes of bones are determined by the muscles as well as by inheritance, it is always to be remembered that a similar form of bone may obtain in different orders or classes of animals, as the result of a similar function in a special region of the body. Such resemblances are familiar to anatomists. Hence much caution is required from the Palæontologist to distinguish between the characteristics of a group, and the extent to which they may be modified by function. This distinction is the first principle of classification. But it is always difficult to estimate the importance of characters in fragments of bones or parts of skeletons, and the difficulty is increased by the fact that if what appears to be but a functional modification should pervade all the species, it becomes a characteristic of the group, and its power of modifying the other organs in a peculiar way has to be considered.

Thus for all practical purposes birds may be said to be characterized by wings, which almost acquire the dignity of class characters from their influence on the respiratory function. But in some birds it has been thought that no bone of the fore-limb was ever developed[V]; and the difference between such a phenomenon and the wing of a Swift, for example, is one almost of infinity, as compared with any other aspect that the anterior limb might have assumed. Therefore, since a bird may part with its fore-limbs and yet remain a bird, I infer that it might apply its fore-limbs to the ground, become a quadruped, and be a bird still. And if in this process the other structures remained unchanged, no one would regard the modification as more than an ordinal one. But should the vertebræ change also, or the pelvis, or the covering of the integument, or the jaws become toothed, then, although the heart and lungs and brain of the imaginary animal retained their class characters, the functional differences being more than those of an order would constitute it a sub-class.

[V] According to Prof. Owen, in Dinornis.

In the same way it is conceivable that serpents may have existed with well-developed limbs, and if they retained their other characters the limbed forms would constitute a sub-order of serpents; but if to these characters they added a closed palate united to the cranium, they would constitute a new order of reptiles. A chelonian might be entirely deprived of its bony covering, and it would still be a chelonian, differing only as a separate family. So that structures which to the eye appear fundamental may be lost without affecting an animal's systematic position, just as animals while resembling each other in form may possess dissimilar organization.