Whoever in the community of Amsterdam could compose verses in Spanish, Portuguese, or Latin, sang or bewailed the martyrdom of the two Bernals. Was Spinoza's view correct that all these martyrs, and the thousands of Jewish victims still hounded by the Inquisition, pursued a delusion? Could the representatives of Judaism allow unreproved, in their immediate neighborhood, the promulgation of the idea that Judaism is merely an antiquated error?

The college of rabbis, in which sat the two chief Chachams, Saul Morteira and Isaac Aboab—Manasseh ben Israel was then living in London—had ascertained the fact of Spinoza's change of opinion, and had collected evidence. It was not easy to accuse him of apostasy, as he did not proclaim his thoughts aloud in the market-place, as Uriel da Costa had announced his breach with Judaism. Besides, he led a quiet, self-contained life, and associated little with men. His avoidance of the synagogue, the first thing probably to attract notice, could not form the subject of a Rabbinical accusation. It is possible that, as is related, two of his fellow-students (one, perhaps, the sly Isaac Naar) thrust themselves upon him, drew him out, and accused him of unbelief, and contempt for Judaism. Spinoza was summoned, tried, and admonished to return to his former course of life. The court of rabbis did not at first proceed with severity against him, for he was a favorite of his teacher, and beloved in the community on account of his modest bearing and moral behavior. By virtue of the firmness of his character Spinoza probably made no sort of concession, but insisted upon freedom of thought and conduct. Without doubt he was, in consequence, laid under the lesser excommunication, that is, close intercourse with him was forbidden for thirty days. This probably caused less pain to Spinoza, who, self-centred, found sufficient resource in his rich world of thought, than to the superficial Da Costa. Also, he was not without Christian friends, and he, therefore, made no alteration in his manner of life. This firmness was naturally construed as obstinacy and defiance. But the rabbinate, as well as the secular authorities of the community did not wish to exert the rigor of the Rabbinical law against him, in order not to drive him to an extreme measure, i. e., into the arms of the Church. What harm might not the conversion to Christianity of so remarkable a youth entail in a newly-founded community, consisting of Jews with Christian reminiscences! What impression would it make on the Marranos in Spain and Portugal? Perhaps the scandal caused by Da Costa's excommunication, still fresh in men's memories, may have rendered a repetition impracticable. The rabbis, therefore, privately offered Spinoza, through his friends, a yearly pension of a thousand gulden on condition that he take no hostile step against Judaism, and show himself from time to time in the synagogue. But Spinoza, though young, was of so determined a character, that money could not entice him to abandon his convictions or to act the hypocrite. He insisted that he would not give up freedom of inquiry and thought. He continued to impart to Jewish youths doctrines undermining Judaism. So the tension between him and the representatives of Judaism became daily greater; both sides were right, or imagined they were. A fanatic in Amsterdam thought that he could put an end to this breach by a dagger-stroke aimed at the dangerous apostate. He waylaid Spinoza at the exit from the theatre, and struck at the philosopher with his murderous weapon. But the latter observed the hostile movement in time, and avoided the blow, so that only his coat was damaged. Spinoza left Amsterdam to avoid the danger of assassination, and betook himself to the house of a friend, likewise persecuted by the dominant Calvinistic Church, an adherent of the sect of the Rhynsburgians, or Collectants, who dwelt in a village between Amsterdam and Ouderkerk. Reconciliation between Spinoza and the synagogue was no longer to be thought of. The rabbis and the secular authorities of the community pronounced the greater excommunication upon him, proclaiming it in the Portuguese language on a Thursday, Ab 6th (July 24th), 1656, shortly before the fast in memory of the destruction of Jerusalem. The sentence was pronounced solemnly in the synagogue from the pulpit before the open Ark. The sentence was as follows:

"The council has long had notice of the evil opinions and actions of Baruch d'Espinosa, and these are daily increasing in spite of efforts to reclaim him. In particular, he teaches and proclaims dreadful heresy, of which credible witnesses are present, who have made their depositions in presence of the accused."

All this, they continued, had been proved in the presence of the elders, and the council had resolved to place him under the ban, and excommunicate him.

The usual curses were pronounced upon him in presence of scrolls of the Law, and finally the council forbade any one to have intercourse with him, verbally or by writing, to do him any service, to abide under the same roof with him, or to come within the space of four cubits' distance from him, or to read his writings. Contrary to wont, the ban against Spinoza was stringently enforced, to keep young people from his heresies.

Spinoza was away from Amsterdam, when the ban was hurled against him. He is said to have received the news with indifference, and to have remarked that he was now compelled to do what he would otherwise have done without compulsion. His philosophic nature, which loved solitude, could easily dispense with intercourse with relatives and former friends. Yet the matter did not end for him there. The representative body of the Portuguese community appealed to the municipal authorities to effect his perpetual banishment from Amsterdam. The magistrates referred the question, really a theological one, to the clergy, and the latter are said to have proposed his withdrawal from Amsterdam for some months. Most probably this procedure prompted him to elaborate a justificatory pamphlet to show the civil authorities that he was no violator or transgressor of the laws of the state, but that he had exercised his just rights, when he reflected on the religion of his forefathers and religion generally, and thought out new views. The chain of reasoning suggested to Spinoza in the preparation of his defense caused him doubtless to give wider extension and bearing to this question. It gave him the opportunity to treat of freedom of thought and inquiry generally, and so to lay the foundation of the first of his suggestive writings, which have conferred upon him literary immortality. In the village to which he had withdrawn, 1656–60, and later in Rhynsburg, where he also spent several years, 1660–64, Spinoza occupied himself (while polishing lenses, which handicraft he had learned to secure his moderate subsistence) with the Cartesian philosophy and the elaboration of the work entitled "The Theologico-Political Treatise." His prime object was to spread the conviction that freedom of thought can be permitted without prejudice to religion and the peace of the state; furthermore, that it must be permitted, for if it were forbidden, religion and peace could not exist in the state.

The apology for freedom of thought had been rendered harder rather than easier for Spinoza, by the subsidiary ideas with which he crossed the main lines of his system. He could not philosophically find the source of law, and transferred its origin to might. Neither God, nor man's conscience, according to Spinoza, is the fountain of the eternal law which rules and civilizes mankind; it springs from the whole lower natural world. He made men to a certain extent "like the fishes of the sea, like creeping things, which have no master." Large fish have the right, not only to drink water, but also to devour smaller fish, because they have the power to do so; the sphere of right of the individual man extends as far as his sphere of might. This natural right does not recognize the difference between good and evil, virtue and vice, submission and force. But because such unlimited assertion on the part of each must lead to a perpetual state of war of all against all, men have tacitly, from fear, or hope, or reason, given up their unlimited privileges to a collective body, the state. Out of two evils—on the one hand, the full possession of their sphere of right and might, tending to mutual destruction, and its alienation, on the other—men have chosen the latter as the lesser evil. The state, whether represented by a supreme authority elected for the purpose, such as the Dutch States General, or by a despot, is the full possessor of the rights of all, because of the power of all. Every one is bound by his own interest to unconditional obedience, even if he should be commanded to deprive others of life; resistance is not only punishable, but contrary to reason. This supreme power is not controlled by any law. Whether exercised by an individual, as in a monarchy, or by several, as in a republic, it is justified in doing everything, and can do no wrong. But the state has supreme right not merely over actions of a civil nature, but also over spiritual and religious views; it could not exist, if everyone were at liberty to attack it under the pretext of religion. The government alone has the right to control religious affairs, and to define belief, unbelief, orthodoxy, and heresy. What a tyrannical conclusion! As this theory of Spinoza fails to recognize moral law, so it ignores steadfast fidelity. As soon as the government grows weak, it no longer has claim to obedience; everyone may renounce and resist it, to submit himself to the incoming power. According to this theory of civil and religious despotism, no one may have an opinion about the laws of the state, otherwise he is a rebel. Spinoza's theory almost does away with freedom, even of thought and opinion. Whoever speaks against a state ordinance in a fault-finding spirit, or to throw odium upon the government, or seeks to repeal a law against its express wish, should be regarded as a disturber of the public peace. Only through a sophistical quibble was Spinoza able to save freedom of thought and free expression of opinion. Every man has this right by nature, the only one which he has not transferred to the state, because it is essentially inalienable. It must be conceded to everyone to think and judge in opposition to the opinion of the government, even to speak and teach, provided this be done with reason and reflection, without fraud, anger, or malice, and without the intention of causing a revolution.

On this weak basis, supported by a few other secondary considerations, Spinoza justified his conflict with Judaism and his philosophical attacks upon the sacred writings recognized by the Dutch States. He thought that he had succeeded in justifying himself before the magistrates sufficiently by his defense of freedom of thought. In the formulation of this apology it was apparent that he was not indifferent to the treatment which he had experienced from the college of rabbis. Spinoza was so filled with displeasure, if not with hatred, of Jews and Judaism, that his otherwise clear judgment was biased. He, like Da Costa, called the rabbis nothing but Pharisees, and imputed to them ambitious and degraded motives, while they wished only to secure their treasured beliefs against attacks. Prouder even than his contemporaries, the French and English philosophers, of freedom of thought, for centuries repressed by the church, and now soaring aloft the more powerfully, Spinoza summoned theology, in particular, ancient Judaism before the throne of reason, examined its dogmas and archives, and pronounced sentence of condemnation upon his mother-faith. He had erected a tower of thought in his brain from which, as it were, he wished to storm heaven. Spinoza's philosophy is like a fine net, laid before our eyes, mesh by mesh, by which the human understanding is unexpectedly ensnared, so that half voluntarily, half compulsorily, it surrenders. Spinoza recognized, as no thinker before, those universal laws, immutable as iron, which are apparent in the development of the most insignificant grain of seed no less than in the revolution of the heavenly bodies, in the precision of mathematical thought as in the apparent irregularity of human passions. Whilst these laws work with constant uniformity, and produce the same causes and the same phenomena in endless succession, the instruments of law are perishable things, creatures of a day, which rise, and vanish to give place to others: here eternity, there temporality; on the one side necessity, on the other chance; here reality, there delusive appearances. These and other enigmas Spinoza sought to solve with the penetration that betrays the son of the Talmud, and with logical consecutiveness and masterly arrangement, for which Aristotle might have envied him.

The whole universe, all individual things, and their active powers are, according to Spinoza, not merely from God, but of God; they constitute the infinite succession of forms in which God reveals Himself, through which He eternally works according to His eternal nature—the soul, as it were, of thinking bodies, the body of the soul extended in space. God is the indwelling, not the external efficient cause of all things; all is in God and moves in God. God as creator and generator of all things is generative or self-producing nature. The whole of nature is animate, and ideas, as bodies, move in eternity on lines running parallel to or intersecting one another. Though the fullness of things which have proceeded from God and which exist in Him are not of an eternal, but of a perishable nature, yet they are not limited or defined by chance, but by the necessity of the divine nature, each in its own way existing or acting within its smaller or larger sphere. The eternal and constant nature of God works in them through the eternal laws communicated to them. Things could, therefore, not be constituted otherwise than they are; for they are the manifestations, entering into existence in an eternal stream, of God in the intimate connection of thought and extension.

What is man's place in this logical system? How is he to act and work? Even he, with all his greatness and littleness, his strength and weakness, his heaven-aspiring mind, and his body subject to the need of sustenance, is nothing more than a form of existence (Modus) of God. Man after man, generation after generation, springs up and perishes, flows away like a drop in a perpetual stream, but his nature, the laws by which he moves bodily and mentally in the peculiar connection of mind and matter, reflect the Divine Being. Especially the human mind, or rather the various modes of thought, the feelings and conceptions of all men, form the eternal reason of God. But man is as little free as things, as the stone which rolls down from the mountain; he has to obey the causes which influence him from within and without. Each of his actions is the product of an infinite series of causes and effects, which he can scarcely discern, much less control and alter at will. The good man and the bad, the martyr who sacrifices himself for a noble object, as well as the execrable villain and the murderer, are all like clay in the hands of God; they act, the one well, the other ill, compelled by their inner nature. They all act from rigid necessity. No man can reproach God for having given him a weak nature or a clouded intellect, as it would be irrational if a circle should complain that God has not given it the nature and properties of the sphere. It is not the lot of every man to be strong-minded, and it lies as little in his power to have a sound mind as a sound body.