Jones's lack of success, in spite of his energetic attempts in collecting at this time the prize money, about which there were many annoying technicalities, increased the discontent of his crew, and prepared the way for the seizure of the Alliance by the mad Landais. Arthur Lee, formerly one of the American commissioners in Europe, had always been hostile to Jones and unsympathetic with Dr. Franklin and with the revolutionary party generally; to such a degree, indeed, that he was accused, not unjustly, of treachery to the cause of American independence. At the time that the Alliance was at L'Orient, Lee was waiting an opportunity to return to America. Captain Landais, who had been deprived of the command of the Alliance by order of Benjamin Franklin, then the sole representative of the United States in France, and who had likewise been ordered by the doctor to report to the Marine Committee on the charge of infamous conduct, planned to take the Alliance from Jones, and was supported in the attempt by Lee, who contended that neither Franklin nor Jones could deprive Landais of a command given him by Congress. Lee's desire to take the ship from Jones was augmented by the latter's refusal to make room for the ex-commissioner's many effects, including two fine coaches,—space which was much needed for the accommodation of supplies for Washington's army.

Lee and Landais consequently encouraged the discontent among the crew of the Alliance, and one day, June 13, when Jones was on shore at L'Orient, Landais went on board the ship, and, supported by his old officers and by Lee, took possession. When Jones heard of it he was very angry, and acted, according to Fanning, "more like a madman than a conqueror;" but, as usual, his anger was quickly controlled and the definite steps he took in the affair were marked by great moderation. The commandant of the defenses at L'Orient had received orders from the French government to fire on the Alliance, if Landais should attempt to take her out of the harbor; and it seems he would have obeyed and probably sunk the ship, had not Jones himself interfered, and induced him to stay his hand. In a letter to Franklin, Jones said:—

"Your humanity will, I know, justify the part I acted in preventing a scene that would have made me miserable the rest of my life."

Jones was probably not over sorry to lose the Alliance. There was nothing very thrilling in the prospect of carrying supplies to America, and Jones at that time hoped fervently to get hold of the Serapis and other ships and make another warlike cruise against the coast of England. So Landais sailed away with the Alliance, but to his own ruin, as the clear-sighted Jones had predicted in a remarkable letter written a short time before the ship sailed to a mutinous officer on the Alliance. On the voyage Landais's eccentricity caused his friend Lee to put him under arrest, and on the arrival in America, a court of inquiry found him unfit for command, and he never again burdened the service.

Jones was left at L'Orient with the little Ariel, armed with eighteen twelve-pounders and four six-pounders, a ship loaned by the king to Dr. Franklin, and with high hopes, as usual, of more glorious opportunities. But many months intervened before he sailed again,—a time he devoted to business and society. As Jones and his interesting midshipman Fanning separated at the end of this period, the latter's final impressions of his captain may here be given:—

"Captain Jones was a man of about five feet six inches high, well shaped below his head and shoulders, rather round shouldered, with a visage fierce and warlike, and wore the appearance of great application to study, which he was fond of. He was an excellent seaman and knew naval tactics as well as almost any man of his age; but it must be allowed that his character was somewhat tinctured with bad qualities ... his courage and bravery as a naval commander cannot be doubted. His smoothness of tongue and flattery to seamen when he wanted them was persuasive, and in which he excelled any other man I was ever acquainted with.... His pride and vanity while at Paris and Amsterdam was not generally approved of."

Fanning has many anecdotes to relate in regard to Jones's affairs of gallantry of an humble character. Several of Jones's biographers have dwelt upon the gorgeous and aristocratic nature of the hero's amours. Fanning has the solitary distinction of narrating the other side. Jones, indeed, was a good deal of a snob, but he was broadly appreciative of the fair sex. He probably was never deeply in love with anybody, certainly not with any woman of humble character. Of such his appreciation was of a simple and earthly kind.

Although Jones seems to have had no intimate friends, with possibly one exception, there certainly was about him a very strong charm, which made him a favorite in good society. He had a flattering tongue, a ready wit, and a gallant manner. Of Jones's attractions Benjamin Franklin once wrote to a woman:—

"I must confess to your Ladyship that when face to face with him neither man nor, so far as I can learn, woman can for a moment resist the strange magnetism of his presence, the indescribable charm of his manner, a commingling of the most compliant deference with the most perfect self-esteem that I have ever seen in a man; and, above all, the sweetness of his voice and the purity of his language."