'The beast that ascended out of the bottomless pit.' The beast: The power that carrieth and beareth up Antichrist, the mother of harlots: The beast upon which the woman sitteth, and by the heads and horns of which she is protected and defended; he is said to ascend out of the bottomless pit; for that he manifesteth by his doings, that he was born there, and came to [do] the work of the king thereof.
'Shall make war against them.' We read that he made war against them all the time of their prophesying in sackcloth, while they were bearing their testimony against his doing; and that his commission was, That he should have leave to make war so long (Rev 12:6). But here we read again, that when they had finished their testimony, and so consequently he had run out the time of his first commission for war, he makes war again. So that this war which now he raiseth against them, seems to be another, a new war, and such as is grounded upon other, to wit, new arguments, besides those upon which his first war stood. By his first war, he sought to beat down and overthrow their testimony (Rev 13:4). By this war he seeketh to overthrow themselves. The first war he made, was grounded upon a vain confidence of his ability to destroy their faith; but this last was grounded upon madness against them, because their testimony had prevailed against him: Wherefore, Torment, wherewith these witnesses by their testimony tormented him and his followers, was the cause of this last war. And this is insinuated when he saith, 'They make merry for their victory over them, because these two prophets,' (to wit, by their testimony,) 'tormented them that dwelt on the earth' (Rev 11:10).
The beast therefore will make a war against the witnesses all the time of their prophesying in sackcloth, which will be a thousand two hundred and threescore days (Rev 12:6). In all which time they shall give him the foil, and overcome him by their faith and testimony; and be proclaimed more than conquerors over him, through the Christ that loved them. But now in this second war he overcomes them, 'he overcomes them, and kills them.'
Jezebel for a long time made war against Elias the prophet, seeking to overthrow the worship of God which he maintained, and to establish the religion of Baal: But when she saw that by all she could do she got nothing, but that the prophet got the day of her worship, priests and worshippers (1 Kings 18:30-40), she breaks out into a rage, as one tormented almost to death, and raises a new war; not now against his religion, but his person, and desperately swears by all the gods that she had, That by tomorrow that time the life of the prophet should be as the life of one of her priests whom he had slain for an idolater (1 Kings 19:2). When the devil sees that he cannot do by argument, he will try if he can by blows.
When Zedekiah, the son of Chenanah, saw that with argument he could not overcome Micaiah, he steps to him, and takes him a box of the ear (1 Kings 22:24). This new war, is a box of the ear which the beast will give the witnesses, because they overcame him by their faith and testimony, all the time that the first war lasted.
Now how long this second war will last, and what strugglings the witnesses will make before he shall overcome them, I know not: This I know, that the text saith, 'by this war he shall overcome them.'
'And shall overcome them.' Saints are not said to be overcome, when they are imprisoned, banished, and killed for their faithful testimony: No, by these things they overcome. To overcome then, is to get the mastery, to subdue, to turn out of possession, to take and hold captive, to strip the subdued of power and privilege, as is sufficiently manifest both by scripture and reason: 'For of whom a man is overcome, of the same he is brought in bondage' (2 Peter 2:19).
So then, when he is said to overcome them, it is meant, he shall get the mastery of them, they shall grow faint before him, have no heart or spirit to bear up in their profession against him: Against him, I say, as she did the thousand two hundred and threescore days' war with him; for then they were overcomers, and did bear away the garland.
Nor do I, for my part, wonder at this, when I consider that these witnesses are a succession of good men; and that when Israel came out of Egypt of old, the feeble and weak-handed did come behind (Deu 25:17-19). It will be the lot therefore of the church, in the latter end of the reign of the beast, to be feeble and weak in their profession, the valiant ones having gone before: These will come, when those that were able have bravely borne their testimony, or when they are upon finishing of that: In comparison of whom, they that come after will be but like eggs to the cocks of the game: wherefore they must needs be crushed, cowed, and overcome. And then will the beast boast himself, as did his type of old, and say, 'My hand hath found as a nest the riches of the people: and as one gathereth eggs that are left, have I gathered all the earth; and there was none that moved the wing, or opened the mouth, or peeped' (Isa 10:14).
A sad time, and it is to happen to the people that are left, to the latter end of the witness-bearers; and that too when they shall have finished their testimony.