After this he was married to the eldest daughter of Bartholomew Fleming merchant in Edinburgh, who was then in Ireland. In Nov. 1635, he was again deposed by the bishop of Down, and a little after, by his orders, excommunicated by one Mr. Melvil minister of Down. This winter, finding no appearance of liberty either to ministers or professors from the bondage of the prelates, he, with others of the deposed ministers, took a resolution to go to New-England; upon which they built a ship for that purpose, and when all things were ready, they, about the 9th of Sept. loosed from Lochfergus; but a violent storm arising, they were driven near the bank of Newfoundland, and were all in danger of being drowned, and, after prayer and consultation, they were obliged to return back to Lochfergus. After this he stayed in Ireland, until he heard that he and Mr. Blair were to be apprehended; and then they went out of the way, and came over to Scotland. When he came to Irvine, Mr. Dickson caused him preach, for which he was called in question afterwards. Leaving Irvine, he passed by Loudon and Lanerk to Edinburgh, where he continued some time.

About the beginning of March 1638, when the body of the land was about to renew the national covenant, he was sent post to London with several copies of the covenant, and letters to friends at court of both nations; when he came there, Mr. Borthwick delivered the letters for him; but he had been there but few days until he had word sent him from the marquis of Hamilton, that he had overheard the king say, He was come, but he should put a pair of fetters about his feet: whereupon, fearing he should be taken in the post-way, he bought a horse, and came home by St. Albans and the western way, and was present at Lanerk and other places, when the covenant was read and sworn unto; and, excepting at the kirk of Shots already noticed, he, as himself says, never saw such motions from the Spirit of God, all the people so generally and willingly concurring; yea, thousands of persons all at once lifting up their hands, and the tears falling from their eyes; so that, through the whole land, the people (a few papists and others who adhered to the prelates excepted) universally entered into the covenant of God, for the reformation of religion against prelates and their ceremonies.

After this anno 1638, he got a call both from Stranrawer in Galloway, and Straiton in Carrick, but he referred the matter to Messrs. Blair, Dickson, Cant, Henderson, Rutherford and his father, who, having heard both parties, advised him to Stranrawer; and he was received there by the presbytery upon the 5th of July 1638. Here he remained, in the faithful discharge of the ministry, until harvest 1648, that he was, by the sentence of the general assembly, transported to Ancrum in Teviotdale. When he came to Ancrum, he found the people very tractable, but very ignorant, and some of them very loose in their carriage; and it was a long time before any competent number of them were brought to such a condition, that he could adventure to celebrate the Lord's supper; but by his diligence, through the grace of God, some of them began to lay religion to heart.

Anno 1649, the parliament and church of Scotland had sent some commissioners to treat with the king at the Hague, in order to his admission; but they returned without satisfaction. Yet the parliament in summer 1650, sent other commissioners to prosecute the foresaid treaty at Breda; and the commission of the kirk chose Mr. Livingston and Mr. Wood, and after that added Mr. Hutcheson to them, with the lords Cassils and Brody as ruling elders, that in name of the church they should present and prosecute their desires. Mr. Livingston was very unwilling to go, and that for several reasons, the chief of which was, he still suspected the king to be not right at heart in respect of the true presbyterian religion, and notwithstanding, he saw that many in the kingdom were ready to receive the king home upon any terms; but he was prevailed on by Messrs. Dickson, James Guthrie, and Patrick Gillespie, to go. After much conference and reasoning with the king at Breda, they were not like to come to any conclusion; here he observed, that the king still continued the use of the service-book and his chaplains, and was many a night balling and dancing till near day. This, with many other things, made him conclude there would be no blessing on that treaty; the treaty, to his unspeakable grief, was at last concluded, and some time after the king set sail for Scotland; but Mr. Livingston refused to go aboard with them; so that when Brody and Mr. Hutcheson saw that they could not prevail with him to come aboard, they desired him before parting to come into the ship, to speak of some matters in hand, which he did, and in the mean while, the boat that should have waited his return, made straight for shore without him. After this the king agreed with the commissioners to swear and subscribe the covenant, and it was laid upon him to preach the next sabbath, and tender the covenants national and solemn league, and take his oath thereon; but he, judging that such a rash and precipitate swearing of the covenants would not be for the honour of the cause they were embarked in, did all he could to deter the king and commissioners from doing it until he came to Scotland; but when nothing would dissuade the king from his resolution, it was done; for the king performed every thing that could have been required of him; upon which Mr. Livingston observed, that it seems to have been the guilt not only of commissioners, but of the whole kingdom, yea of the church also, who knew the terms whereupon he was to be admitted to his government; and yet without any evidence of a real change upon his heart, and without forsaking former principles, counsels and company.

After they landed in Scotland, before he took his leave of the king at Dundee, he used some freedom with him. After speaking somewhat to him anent his carriage, he advised him, that as he saw the English army approaching in a most victorious manner, he would divert the stroke by a declaration, or some such way, wherein he needed not weaken his right to the crown of England, and not prosecute his title at present by fire and sword, until the storm blew over, and then perhaps they would be in a better case to be governed, &c. But he did not relish this motion well, saying he would not wish to sell his father's blood; which made Mr. Livingston conclude, that either he was not called to meddle in state matters, or else he should have little success. Another instance of this he gives us, anno 1654, when he and Mr. Patrick Gillespie and Mr. Minzies were called up by the protector to London, where he proposed to him, that he would take off the heavy fines, that were laid on severals in Scotland, which they were unable to pay; he seemed to like the motion, but when he proposed the overture to the council, they went not into the purpose.

While at London, preaching before the protector, he mentioned the king in prayer, whereat some were greatly incensed; but Cromwel knowing Mr. Livingston's influence in Scotland, said, "Let him alone; he is a good man; and what are we poor men in comparison of the kings of England?"

The general assembly appointed some ministers, and him among the rest, to wait upon the army and the committee of estates that resided with them; but the fear and apprehension of what ensued, kept him back from going, and he went home until he got the sad news of the defeat at Dumbar. After which Cromwel wrote to him from Edinburgh to come and speak to him; but he excused himself. That winter the unhappy difference fell out anent the public resolutions; his light carried him to join the protestors against the resolutioners; and the assembly that followed thereafter, he was present at their first meeting in the west at Kilmarnock, and several other meetings of the protesting brethren afterwards; but not being satisfied with keeping these meetings so often, and continuing them so long, which he imagined made the breach wider, he declined them for some time.

After this, he spent the rest of his time in the exercise of the ministry, both at Ancrum and other places, until summer 1660, that news was brought him that the king was called home, and then he clearly foresaw that the overturning of the whole work of reformation would ensue, and a trial to all who would adhere to the same. But anno 1662, when the parliament and council had, by proclamation, ordered all ministers, who had come in since 1649, and had not kept the holy day of the 29th of May, either to acknowledge the prelates or remove, he then more clearly foresaw a storm approaching. At the last communion which he had at Ancrum, in the month of October, he says, That after sermon on Monday, it pleased the Lord to open his mouth, in a reasonably large discourse anent the grounds and encouragements to suffer for the present controversy of the kingdom of Christ, in the appointing the government of his house; then he took his leave of that place, although he knew nothing of what was shortly to follow after.

After he had, with Elijah, eaten before a great journey, having communicated before he entered upon suffering, he heard in a little time, of the council's procedure against him and about twelve or sixteen others who were to be brought before them; he went presently to Edinburgh (before the summons could reach him) and lurked there some time, until he got certain information of the council's design, whether they were for their life, like as was done with Mr. Guthrie, or only for banishment, as was done with Mr. Mac Ward and Mr. Simpson; but, finding that they intended only the last, he accordingly resolved to appear with his brethren. He appeared Dec. 11, and was examined[149] before the council; the sum of which came to this, That they required him to subscribe or take the oath of allegiance, which he, upon several solid grounds and reasons, refused; and sentence was pronounced, that in forty-eight hours he should depart Edinburgh, and go to the north side of Tay, and within two months depart out of all the king's dominions. Accordingly he went from Edinburgh to Leith, and thereafter, upon a petition in regard of his infirmity, he obtained liberty to stay there until he should remove. He petitioned also for a few days to go home to see his wife and children, but was refused; as also for an extract of his sentence, but could not obtain it. Anno 1663, he went aboard, accompanied by several friends to the ship; they set sail, and in eight days came to Rotterdam, where he found the rest of the banished ministers there before him. Here he got frequent occasion of preaching to the Scots congregation at Rotterdam; and in Dec. following, his wife, with two of his children, came over to him, and the other five were left in Scotland.

Here, upon a retrograde view of his life, he (in the foresaid historical account) observes, that the Lord had given him a body not very strong, and yet not weak; for he could hardly remember himself wearied in reading and studying, although he had continued some seven or eight hours without rising, and also that there was but two recreations that he was in danger to be taken with; the first was hunting on horseback, but this he had very little occasion of, yet he found it very inticing; the other was, singing in concerts of music, wherein he had some skill, and in which he took great delight. He says further, That he was always short-sighted, and could not discern any person or thing afar off, but hitherto he had found no occasion for spectacles, and could read small print as long and with as little light almost as any other. And, as to his inclination, he was generally soft and amorous, averse to debates, rather given to laziness than rashness, and too easy to be wrought upon. And, although he could not say what Luther affirmed of himself concerning covetousness, yet he could say, that he had been less troubled with covetousness and cares than many other evils, and rather inclined to solitariness than company, and was much troubled with wandering of mind and idle thoughts; and for outward things, he was never rich (and although when in Killinchie he had not above four pounds sterling of stipends a-year) yet he was never in want.