June 20, 1628, the new company sent out a party of emigrants under John Endicott, who arrived, September 6, at Naumkeag, where, with the number already on Boston Bay at their coming, they made about fifty or sixty persons. He found the remains of Conant's company disposed to question the claims of the new-comers, but the dispute was amicably arranged, and in commemoration Naumkeag was given the name of Salem, the Hebrew word for "Peaceful."[7 ]

For nearly a year little is known of the settlers except that in the winter some died of the scurvy and others of an "infectious fever."[8 ] Endicott wrote to Plymouth for medical assistance, and Bradford sent Dr. Samuel Fuller, whose services were thankfully acknowledged. One transaction which has come down to us shows that Endicott's government early marked out the lines on which the Massachusetts colony travelled for many years afterwards. Endicott made it evident that he would make no compromise with any of the "ungodly" in Massachusetts. Morton's settlement fell within Endicott's jurisdiction, and he resolved to finish the work which the Plymouth people began. So, about three months after the first visit, Endicott, with a small party, crossed the bay, hewed down the abominable May-pole, and, solemnly dubbing the place Mount Dago, in memory of the Philistine idol which fell down before the ark of the Lord, "admonished Morton's men to look ther should be better walking."

In the mean time, important events were happening in England. John Oldham, having Thomas Morton in custody, landed at Plymouth, England, not long after Endicott left for America. Morton posed as a martyr to religious persecution, and Oldham, who remembered his own troubles with the Plymouth settlers, soon fraternized with him. They acted in connection with Ferdinando Gorges and his son John Gorges, who, instead of punishing Morton for illicit trading, made use of him and Oldham to dispute the title of the grant to Endicott and his associates. Robert Gorges was then dead, and his brother John was heir to his patent for the northeast side of Massachusetts Bay.

Accordingly, John Gorges, in January, 1629, executed two deeds—one to John Oldham and the other to Sir William Brereton—for two tracts of land out of the original grant to Robert Gorges. Oldham planted himself on his new rights, and tried to make his patent the means to obtain from the Massachusetts Company in England the exclusive management of the colony's fur trade, or the recognition of his rights as an independent trader. But the company had already set aside the profits of the fur trade as a fund for the defence of the colony and the support of the public worship, and they would make no concession.[9 ] Instead, they took the best means to strengthen their title and suppress such disturbers as Oldham.

A royal charter was solicited, and March 4, 1629, one of liberal powers passed the seals, chiefly through the influence of the earl of Warwick.[10 ] It created a corporation by the name of the "Governor and Company of Massachusetts Bay in New England," and confirmed to them all the territory given by the patent from the Council for New England. The administration of its affairs was intrusted to a governor, deputy, and eighteen assistants, who were annually, on the last Wednesday of Easter term, to be elected by the freemen or members of the corporation, and to meet once a month or oftener "for despatching such business as concerned the company or plantation." Four times a year the governor, assistants, and all the freemen were to be summoned to "a greate generall, and solemne assemblie," and these "greate and generall courts" were invested with full power to choose and admit into the company so many as they should think fit, to elect and constitute all requisite subordinate officers, and to make laws and ordinances for the welfare of the company and for the government of the plantation.

The company was given the power to transport to its American territory all persons who should go willingly, but the corporate body alone was to decide what liberties, if any, the emigrants should enjoy. In fact, the only restrictions in the charter upon the company and its court of assistants were that they should license no man "to rob or spoil," hinder no one from fishing upon the coast of New England, and pass "no law contrary or repugnant to the lawes and statutes of England." Matthew Cradock was named in the charter the governor of the company.

One of the first steps taken by the company under the new charter was to organize a temporary local government for the colonists in Massachusetts. This was to consist of a governor, a deputy governor, and thirteen councillors, of whom seven were to be named by the company, three were to be chosen by these seven and the governor, and three more were to be appointed by the "old planters" found in Massachusetts at the arrival of Endicott. Land was allotted on a plan like that adopted by the London Company: each shareholder was to have two hundred acres for every £50 that he invested, and if he settled in that country, fifty more for himself and fifty more for each member of his family.[11 ]

A letter of instructions was draughted, April 17, to Governor Endicott, in which mention was made of the negotiations with Oldham, and orders given to effect an occupation of the territory covered by his grant from John Gorges. This letter was sent off by a special ship which reached Salem June 20, 1629, and Endicott promptly despatched three brothers of the name of Sprague, and a few others, who planted themselves at Mishawum, within the disputed territory, where they found but "one English palisadoed and thatched house wherein lived Thomas Walford, a smith." Other emigrants followed, and there, in July, was laid out by Endicott a town which was named Charlestown. This practically ended the difficulty with Oldham, who was kept in the dark till the ship sailed from England, and was then told by the company that they were determined, on advice of counsel, to treat his grant as void. As for Brereton, he was made a member of the company and did not give any real trouble.[12 ]

May 11, 1629, sailed from London five ships carrying about four hundred settlers, most of whom were servants, and one hundred and forty head of cattle and forty goats. They arrived at Salem, June 27, and about four weeks later the ecclesiastical organization of the colony was effected by John Endicott, who had already written to Bradford that the worship at Plymouth was "no other than is warranted by the evidence of the truth." He set apart July 20 for the work, and, after a portion of the morning spent in prayer, Samuel Skelton and Francis Higginson, two of the four ministers who accompanied the last arrivals, avowed their belief in the doctrines of the Independents, and were elected respectively pastor and teacher. A confession of faith and a church covenant were drawn up, and August 6 thirty persons associated themselves in a church.[13 ]

Two of the gentlemen emigrants, John and Samuel Browne, presumed to hold a separate service with a small company, using the Prayer Book. Thereupon the hot-headed Endicott arrested them, put them on shipboard, and sent them back to England. This conduct of Endicott's was a flagrant aggression on vested rights, since the Brownes appear in the charter as original promoters of the colony, and were sent to Massachusetts by the company in the high capacity of assistants or councillors to Endicott himself. The two brothers complained in England, and in October, 1629, the company sent Endicott a warning against "undigested counsels ... which may have any ill construction with the state here and make us obnoxious to an adversary."[14 ]