The gables of the Transepts are not so high as those of the nave, but the clerestory parapets are on the same level. The side aisles are much lower than those in the nave or the presbytery. The parapets are plain, over a series of small arches supported by corbels; except that in the eastern aisle of the south transept the parapet rests on plain corbels, and above the western clerestory of the other transept is a cornice with Perpendicular bosses. In this clerestory, again, the buttresses are Perpendicular, whereas otherwise throughout the transepts they are flat Norman. Over the eastern aisle of the north there is no cornice or corbel; "the parapet," says Woodward, "with no more than a water-table under it, is carried across the gable of the north transept, so as to form an alura above the buttress, in front of the circular window there." The Perpendicular rose-window in the northern gable cannot now be seen from the interior, being hidden by the transept ceiling, but in the illustration from Britton, on page 59, it is visible. The corresponding gable on the south shows panelling with interlacing Norman arches, but there are only two narrow lights. Many symptoms show that square towers were to have been erected flanking the transept gables. There is an unfinished turret at the north-east corner of the north transept, while the springing of an arcade and the generally incomplete appearance prove that a side tower was intended. The other three extreme angles of the transepts also bear out this view. The width from east to west of the transepts is enormous as compared with the height of the central tower above. It rather looks from the presence (barely perceptible from outside) of the westernmost windows of the presbytery aisles as if those who carried on Wykeham's work had meant to reduce this great width, and give more importance to the presbytery and retro-choir externally. It is certain, at any rate, that the Norman transepts narrowly escaped a complete transformation. That on the north side of the cathedral shows very considerable alterations, in the majority of its windows, from the old Norman pattern. A built-up doorway may be noticed under the first window from the west of this transept.
The exterior of the Presbytery has only three compartments on each side, but in each there are four lights in aisle and clerestory alike. The windows are of the Wykeham pattern, though probably a little later in date than his work. The buttresses, which rise above the aisle roof, culminate in square panelled pinnacles, surmounted by crocketted ogee canopies. From these buttresses spring graceful flying-buttresses, with pierced spandrels running to the clerestory walls. On the northern side the plain parapet has over it a pierced battlement.
The East End, as it now stands, is some 110 feet beyond the original Norman termination, and presents a square face, projecting with a flat parapet beyond the high gable over the actual east window. The Norman apse was demolished about 1320 in all probability, and the present polygonal end substituted for it. It seems that originally the aisles of the Norman presbytery continued round this apse, which was flanked by two small towers. The eastern chapel may have been dedicated to the Holy Trinity as at Canterbury, and probably extended as far as the western arch of the present Lady Chapel. The central gable of the old termination, rather acute in form, is richly decorated with panels and crocketting, and is crowned by a tabernacle wherein Bishop Fox is represented leaning on the pelican. "Three of the panels in the centre are pierced and glazed, forming a small square-headed window; and under it is a door opening upon an alura, behind a crenelated, panelled, and pierced parapet, over a cornice with bosses, at the base of the gable, and just above the east window" (Woodward). The Perpendicular east window has seven lights, and resembles, in the form of its head, Wykeham's windows. A portrait bust of Fox has been discovered on the north corbel of the hood-mould of this window, and the flying-buttresses (which, as Willis pointed out, the jointing of the masonry proves to be later insertions into the clerestory walls) have the pelican carved on them. The whole gable is flanked by richly canopied octagonal turrets, on which the flying-buttresses abut. The lower part of the east window cannot be seen from below, being lost behind the roof of the chantry aisles.
The whole of the eastern arm of the cathedral is curiously mixed in style, furnishing examples of Early English, Decorated, and Perpendicular architecture. Beyond the main east gable just described projects a low Early English structure of three nearly equally high aisles, of which the central or Lady Chapel has received a further Perpendicular addition. There has been apparently a slight subsidence of the Early English walls, which has caused the irregular look of the arches in the interior of the southern retro-choir aisle (see page 69). Above the plain string-course of the retro-choir there is in each compartment, under a level parapet, an arcade of narrow pointed arches, four in number, the central couple of each set being pierced and glazed, so as to form pairs of lancet windows. The Langton and Guardian Angels' chapels, which project not quite half as far as the Lady Chapel from the old eastern limit of the church, show a triple series of arcades, diminishing in size as they mount. The central arcade is much cut into on the eastern face by the large three-light windows of the lateral chapels. There is no parapet above the arcades. At the angles between these chapels and the retro-choir aisles are staircases enclosed in small octagonal turrets rising slightly above the adjoining parts with merely a plain parapet at the top.
The Lady Chapel has at the end and at each side a fine seven-light Perpendicular window, the heads of the lights below the transom being cinquefoiled, while above each window is a cornice supported by small arches resting on corbels; over all is a pierced battlement, which is also crenelated at the actual east end. Below the east window of the Lady Chapel, between the two great buttresses with mutilated canopies on the two lower of their three divisions, there is some blank panelling, consisting of four shallow-arched recesses with a pilaster down the centre, each arch uniting two minor ones with cinquefoil cusps at the head and crowned by a quatrefoil with a rosette in the middle. There were originally four heads at the ends of the corbels under these quatrefoils, but the southernmost is broken away. A similar arcade runs along the southern wall of the Lady Chapel, but there is none on the north side. The two main corbel-tables at the east end show the arms of England and France and the bishop's device of three "torteaux." Under these, at a short distance from the ground, are two smaller windows, which give light to the Lady Chapel crypt. The panelling dates from about 1490, and is due to Bishop Peter Courtenay.