| A Maske [Comus] | 1637 |
Lycidas
(In Justa Edouardo King Naufrago) | 1638 |
| Of Reformation touching Church-Discipline in England | 1641 |
| Of Prelatical Episcopacy | 1641 |
| Animadversions upon the Remonstrant's defence against Smectymnuus | 1641 |
| The Reason of Church-Government urg'd against Prelaty | 1641 |
| Apology against a Pamphlet called A Modest Confutation of theAnimadversions, etc. | 1641 |
| Doctrine and Discipline of Divorce | 1643 |
| Of Education. To Master S. Hartlib | 1644 |
| The Judgment of Martin Bucer, now Englisht | 1644 |
| Areopagitica | 1644 |
| Tetrachordon | 1644 |
| Colasterion | 1645 |
| Poems | 1645 |
| Tenure of Kings and Magistrates | 1649 |
| Observations upon the Articles of Peace with the Irish Rebels(Articles of Peace, etc.) | 1649 |
| Eikonoklastes | 1649 |
| Pro populo Anglicano defensio contra Salmasium | 1651 |
| A Letter touching the Dissolution of the late Parliament | 1653 |
| Pro populo Anglicano defensio secunda | 1654 |
| Scriptum Dom-Protectoris contra Hispanos | 1655 |
| Pro se defensio contra A. Morum | 1655 |
| Treatise on Civil Power in Ecclesiastical Causes | 1659 |
| Considerations touching the likeliest means to remove Hirelingsout of the Church | 1659 |
| Ready and easy way to establish a free Commonwealth | 1660 |
| Paradise Lost | 1667 |
| Accedence commenc't Grammar | 1669 |
| History of Britain | 1670 |
| Paradise Regained | 1671 |
Samson Agonistes
(With preceding work) | 1671 |
| Artis Logicæ plenior Institutio | 1672 |
| Of true Religion, Heresie, Schism, Toleration, and what best meansmay be used against the growth of Popery | 1673 |
| Epistolarum familiarium liber | 1674 |
| Declaration or Letters Patents of the Election of this presentKing of Poland, John the Third | 1674 |
|
| Literæ Pseudo-Senatus Anglicani, Cromwellii, etc. | 1676 |
| Character of the Long Parliament and Assembly of Divines in 1641 | 1681 |
| Brief History of Moscovia | 1682 |
| Works [in prose] | 1697 |
| Historical, political, and miscellaneous works | 1698 |
| Original Letters and Papers of State addressed to Oliver Cromwell | 1743 |
| De Doctrina Christiana | 1825 |
| Common Place Book | 1876 |