Secondly, I observe from the scriptures he quoteth for this toleration, Phil. iii. [17], and Rom. xiv. [1-4], how closely, yet I hope unadvisedly, he makes the churches of Christ at Philippi and Rome all one with the cities Philippi and Rome, in which the churches were, and to whom only Paul wrote. As if what these churches in Philippi and Rome must tolerate amongst themselves, that the cities Philippi and Rome must tolerate in their citizens: and what these churches must not tolerate, that these cities, Philippi and Rome, must not tolerate within the compass of the city, state, and jurisdiction.
Truth. Upon that ground, by undeniable consequence, these cities, Philippi and Rome, were bound not to tolerate themselves, that is, the cities and citizens of Philippi and Rome, in their own civil life and being; but must kill or expel themselves from their own cities, as being idolatrous worshippers of other gods than the true God in Jesus Christ.
Difference between the church and the world.
But as the lily is amongst the thorns, so is Christ’s love among the daughters; and as the apple-tree among the trees of the forest, so is her beloved among the sons; so great a difference is there between the church in a city or country, and the civil state, city, or country in which it is.
No less then (as David in another case, Ps. ciii. [11], as far as the heavens are from the earth) are they that are truly Christ’s (that is, anointed truly with the Spirit of Christ) [different] from many thousands who love not the Lord Jesus Christ, and yet are and must be permitted in the world, or civil state, although they [i. e., the world, &c.] have no right to enter into the gates of Jerusalem, the church of God.
The church and civil state confusedly made all one.
And this is the more carefully to be minded, because whenever a toleration of others’ religion and conscience is pleaded for, such as are (I hope in truth) zealous for God, readily produce plenty of scriptures written to the church, both before and since Christ’s coming, all commanding and pressing the putting forth of the unclean, the cutting off the obstinate, the purging out the leaven, rejecting of heretics. As if because briars, thorns, and thistles may not be in the garden of the church, therefore they must all be plucked up out of the wilderness. Whereas he that is a briar, that is, a Jew, a Turk, a pagan, an anti-christian, to-day, may be, when the word of the Lord runs freely, a member of Jesus Christ to-morrow, cut out of the wild olive and planted into the true.
Persecutors have forgotten the blessedness promised to the merciful, Matt. v. [7.]
Peace. Thirdly, from this toleration of persons but holding lesser errors, I observe the unmercifulness of such doctrines and hearts, as if they had forgotten the blessedness; Blessed are the merciful, for they shall obtain mercy, Matt. v. [7.] He that is slightly and but a little hurt, shall be suffered, and means vouchsafed for his cure. But the deep wounded sinners, and leprous, ulcerous, and those of bloody issues twelve years together, and those which have been bowed down thirty-eight years of their life, they must not be suffered, until peradventure God may give them repentance. But either it is not lawful for a godly magistrate to rule and govern such a people, as some have said, or else if they be under government, and reform not to the state religion after the first and second admonition, the civil magistrate is bound to persecute, &c.
Truth. Such persons have need, as Paul to the Romans, chap. xii. 1, to be besought by the mercy of God to put on bowels of mercy toward such as have neither wronged them in body nor goods, and therefore justly should not be punished in their goods or persons.