Fray Miguel de Benavides resigns his bishopric (July 4), to become archbishop of Manila. On the next day he reports to the king his arrival at Manila, and the present condition of affairs in the islands, which is very disheartening. The Mindanao pirates have ravaged the coasts, and carried away many captives. The richest part of the city, including the merchandise stored in the warehouses, has been destroyed by fire; and the ships from Mexico arrived too late for the merchants to ship goods thither this year. The people are full of anxiety over a possible war with the Chinese; and the archbishop deprecates the laxity of the royal officials in allowing so many Chinese to live in the islands. They are so numerous that their presence is a menace to the Spaniards, and they are corrupting the natives with their own vicious practices. He urges that most of the Chinese be expelled from the islands, and that the conduct of the civil officials be investigated and punished. On the next day, he writes another letter to ask that certain matters in the islands be set right. The trade upon which the people depend for support is being taken from them by unscrupulous Spaniards from Mexico and Peru. The archbishop has been urged to excommunicate those citizens of Manila who are engaged in this illegal traffic, but refuses to do so, not thinking this the right procedure in such a case; and his efforts to secure redress from the Audiencia are fruitless. He also complains that offices are given to friends of the auditors; that the latter and their women-folk monopolize the best seats in the church; and that various irregularities have crept into the church at Manila. Benavides criticises the religious orders in the islands, saying that they often neglect their duties to the Indians; and asks that the friars be not allowed to leave their charges at their own pleasure. The Dominicans and Franciscans maintain strict discipline, but neglect the Indians. The Augustinians are in great need of inspection and reform. The Jesuits lead exemplary lives, and are excellent instructors; but the Indians complain that these fathers have taken from them their lands and property. Benavides asks the king to redress this wrong. They also keep infidel Chinese on these lands, who are corrupting the Indians. The bishop demands that he shall be consulted by the governor in regard to the assignment of charges to the religious orders; and that priests shall be tried not by the Audiencia, but by the ecclesiastical courts. He asks various favors for the city and its people, and that military aid be sent to the island from Mexico. The cathedral needs repairs, and the episcopal residence is very small and inadequate to the archbishop's needs. The Jesuits should not be allowed to have a university, nor to obtain the funds which were given by the old soldiers in order to make restitution to the conquered Indians.

The Audiencia of Manila make a report (July 2, 1603) of various matters and events. Two new auditors have arrived at Manila, and Morga is transferred to Mexico. They recount the dangers and the safe return of the ship "Rosario" from Japan; and the losses incurred by fire at Manila, half of the city being destroyed. They note various matters about which they have received the royal commands, the most important of these referring to the personal services rendered by the Indians—which, the Audiencia state, are exacted only when necessary, and then paid for at fair rates. Two days later (July 4) the fiscal advises the king that it would be well to make the archbishop of Manila the president of the Audiencia—a request which is ignored by the government. Acuña notifies the king (July 20, 1603) of the failure of the Portuguese expedition against Maluco, and urges that the king take prompt measures to conquer that fort.

On November 29, 1603, the king sends instructions to Acuña to deport the Chinese residing in the islands, and to restrict the immigration of others, until no more than three thousand are left—these to be only such workmen as are needed for the service of the country. As a result of various restrictions imposed upon them, the Chinese revolt (October 9) and attack Manila; but the Spaniards subdue them after several sharp engagements, many of the Chinese being slain, and the ringleaders are executed. One of the Jesuits in Manila, Gregorio Lopez, writes to the king (December 10, 1603) to ask for reënforcements to be sent to the islands, in order that the Mindanao pirates may be driven back; they are raiding the Visayan Islands, and endangering the existence of the Christian communities formed there by the Jesuit missionaries. A letter from the cabildo of the cathedral (December 11) informs the king of the revolt of the Chinese, and the subsequent conflagration in Manila. The Dominican provincial complains (December 15) that the colony is going to destruction because the royal decrees have not been observed, especially those restricting Chinese immigration, and calls for a rigorous investigation of the conduct of the colonial authorities—to be made preferably by an ecclesiastic. Bishop Benavides writes, at the same time, a brief letter to the king, similar in tenor to that of the provincial. With his commendation of Fray Diego de Guevara to the king go other credentials for that envoy. Letters relating the events of the Chinese insurrection are sent to Spain by the governor and the Audiencia (December 12 and 18, 1603). The fortifications of Manila are being pushed forward, and an envoy has been sent to China to explain the recent revolt and its punishment. Acuña has also endeavored to procure military supplies from that country to supply the present deficiency; he dreads lest the trade with China may be cut off, which would ruin the Philippine colony. Acuña has enlisted several military companies among the Indians, who have done good service in quelling the Sangley insurrection. He recounts his difficulties in equipping a small fleet for the defense of the islands. The Mindanao pirates have again raided the islands; but the Chinese insurrection made it necessary to recall the troops who had been sent to check the pirates. Acuña relates the chief events of the past year in the Mindanao campaign, and the present state of affairs there. He complains of the lack of funds, and entreats that money be promptly sent from Nueva España. A postscript to this letter, dated December 23, asks that the conduct of the royal officials at Manila be investigated, as they had illegally allowed so many Chinese to take up residence there.

The chronological order of our narrative is here interrupted to survey the course of the Jesuit missions as related by Pedro Chirino in his Relacion de las Islas Filipinas. After a brief prefatory note, he begins by describing the location of the islands and their discovery and settlement by Spaniards. The finding of the Santo Niño in Cebú in 1565 is related at length, with an account of the miracles and the veneration connected with it; and the patron saints invoked by the Spaniards are enumerated. Among these is especially prominent St. Potenciana, chosen as their patron and protector against hurricanes. Chirino briefly describes the dress, customs, and character of the natives, and the game, fish, and fruits which serve them as food; and, at some length, the wonderful bamboo plant. He enumerates the imports into the Philippines from surrounding countries, and the occupations of the people therein who come to the islands; and praises the wealth and comfort of that region.

Chirino then mentions the coming to the islands of the various religious orders, especially recounting the labors and privations of his own order, the Jesuits, and the beginning of their settlement at Manila. Five priests, with one lay brother, are the founders of that work; Suarez dies from overwork, Sanchez goes back to Europe, and Sedeño conducts the affairs of the mission—laboring for the good of the colony in all matters, both spiritual and secular. The Jesuits exert considerable influence over the Chinese and Japanese who come to Manila. In chapter vi are enumerated the names of the larger islands in the Filipinas, and their extent is compared with that of Spain.

Chirino next defines the bishoprics and religious provinces in the islands—inserting in this account a description of the process of tattooing; and proceeds to relate how the Jesuits extended their labors to the Indian villages outside of Manila. In the district of Balayan, they have baptized some seven thousand natives within ten years. The village of Taitai is removed, by Chirino's influence and the superstitious fears of the natives, to a more secure and healthful site. He describes the customs of the natives in bathing, which is a universal and frequent practice among them. On the shore of the lagoon of Bai are hot springs, which have already become a noted health resort. Various trees native to the islands are described at length, as well as the Chinese method of reducing a large tree to a dwarf pot-plant. Interesting particulars are given regarding the Bisayans and Negritos who inhabit Panay, and of a petty war between those peoples. The Jesuits have done excellent missionary work there, in the district of Tigbauan; some particulars of this are related. One of their number, Martin Henriquez, dies from overwork, and Chirino is ordered to return to Manila. In June, 1595, eight more Jesuits come with Morga; and the missions of the order are now extended into Cebú, Leyte, and Samar. A chapter is devoted to the pious labors and death of Father Antonio Sedeño. In 1596 a large reënforcement of Jesuits arrives at the islands, headed by Francisco de Vera; and the work of the order there receives new impetus. The missionaries in all the religious orders are able to master the native languages with so little difficulty that "it seems a gift from heaven." Chirino gives some account of these, illustrated with specimens of three—Tagalan, Harayan, and Visayan—with the alphabet used by the Filipinos. He also praises the politeness, in word and act, of the Tagalos, and gives them credit for much musical ability. A chapter is assigned to the native alphabet and mode of writing. All, women as well as men, write and read; and they have already learned to do so in the Spanish language as well as in their own.

Chirino relates the progress of the Jesuit mission during the year 1596-97. The curriculum of the Manila college is enlarged, and its church (which is described in detail) is completed. A minute account is given of a nine days' fiesta in honor of the relics of saints which are deposited in the church. At this time is begun the practice of self-scourging as a voluntary penance. The Jesuit church is frequented by the Indians in great numbers, not only on special occasions, but throughout the year: and they display the utmost devotion, even forming among themselves a confraternity in honor of the relics. Their piety shows practical results, especially in the modesty and virtue of their women, qualities which the heathen neither value nor desire; Chirino narrates some instances of triumphant virtue. An account is given of the foundation and progress of the girls' seminary of Santa Potenciana: and of the various ministrations of the Jesuits in the hospitals and elsewhere in Manila. The writer relates the methods of conducting the mission of Taytay, and events there during the year 1597. Three fine churches are erected, and the missionaries gain the good-will not only of those Indians, but even of the savages in the mountains; the taming and conversion of one of these, the fiercest of his tribe, is narrated. After him, entire villages come to live near the mission, the father in charge helping them to establish their homes there; he even converts all the heathen priests of one tribe. Not only the Tagalos but the Negrillos resort to the mission, and many are converted. Chirino laments the idolatries and superstitions which still linger among even the more civilized natives; and proceeds to recount their religious and superstitious beliefs. All their religion is based on tradition and custom, and is handed down in songs. Their beliefs regarding gods, demons, etc., are mentioned; Chirino reduces most of these to their adoration of their ancestors, in whose honor they worship various images. They also worship animals, birds, and other natural objects; and have many superstitions. Chirino demolishes the little buildings dedicated to the anitos. Among those people their priests are also their physicians, or "medicine-men;" and in both rôles they deceive the credulous and ignorant votaries of superstition. The mode of offering sacrifices is described. In the mission village at Taytay, certain idolatrous rites have been secretly practiced, under the influence of the heathen priestesses; but this is revealed by the faithful among the natives to the missionaries, who promptly eradicate the evil and demolish the idols. All the heathen priestesses are converted, and now lead exemplary Christian lives.

Chirino remains alone in Cebú after Sedeño's death (1595). He not only maintains the usual services in the Jesuit church there, but undertakes to instruct the Chinese, whose language he soon learns sufficiently for that purpose. He works in great harmony with the Augustinians of the city, who aid him in times of need; and with those of other orders who sometimes come to Cebú. In September, 1596, some of the recently-arrived Jesuits are assigned to that city, and great activity ensues in their mission, including a school for children. The Jesuits extend their labors to Leyte, which island is described by Chirino; he praises the hospitality and fraternal feeling which prevail among its people. Five mission stations are established there, and many conversions are secured. A sketch of the mission labors for 1597 in each of these posts is given—Dulac, Carigara, Paloc, Alangalang, and Ogmuc. In Dulac a church is erected, and a school opened, and many are converted. The station at Caligara is also flourishing, and especial mention is made of two remarkable conversions there, one of a boy five years old. At Paloc the fathers encounter some dislike, apparently inspired by the heathen priests; but this is soon replaced by affection and religious ardor. Some miraculous cures occur here. At Alangalang, Cosmo de Flores forms a large mission village from many scattered hamlets; but dies soon after its foundation. The fathers are welcomed in Ogmuc, and a school for the children is at once begun; they are delighted at the cleverness and docility of these little ones. Many of those people are converted, including several chiefs.

Here Chirino again digresses to an account of "marriages, dowries and divorces among the Filipinos." He "had lived in the Filipinas almost ten years" before he knew that some of the natives practiced polygamy, which was not a custom in Manila, Panay, and other islands where the Spaniards had long dwelt, but had some currency among the Visayans. In certain parts of Mindanao, the woman has two husbands; but monogamy is the prevailing custom of the archipelago. The first degree of consanguinity is the only one which bars marriage. Various betrothal and marriage ceremonies are described, and their usage regarding dowries and divorces. Chirino thinks that polygamy in those islands has been derived from the "cursed doctrine" of Mahomet.

He next relates the entrance of the Jesuit missionaries into the island of Ibabao (now Samar); they find the people well disposed toward the Christian faith, and soon have churches and schools established. On one occasion, all the people of the island of Maripipi come to the fathers for baptism, and receive it, as they show themselves well prepared for it. A mission is begun at Catubig, in the eastern part of Samar; but for lack of workers it has not been maintained. Another mission has been established in Bohol, where their efforts are greatly aided by the prevalence of monogamy among the people, who suddenly abandon their idols and drunken feasts.