Professor Clarke, having become a member of the American Association for the Advancement of Science in 1869, assisted, in 1875-'76, in the organization of its section on chemistry, a branch which had theretofore been but little represented in the Proceedings of the association. Prof. S. W. Johnson was elected chairman of the new section for the meeting in 1876 at Detroit, and Professor Clarke was commissioned to make the necessary efforts to insure a full attendance of chemists and others interested in the applications of chemistry. In 1888 he presided over the section; and he has ever been active in building it up, and in the development of the American Chemical Society.

Professor Clarke has published about seventy-five scientific papers in various journals, and many popular articles, especially in Appletons' Journal and the Popular Science Monthly. His first scientific paper, A New Process in Mineral Analysis, was published in the American Journal of Science for March, 1869. Other important papers have related to analytical methods, to the constitution of the tartrates of antimony, and to topics on chemical mineralogy, including especially the constitution of the silicates.

Many of his popular articles relate to educational affairs, and present forcible arguments for a fuller recognition of science in the course of instruction, and cogent demonstrations of the need of better teaching of science and better qualified teachers. When occasion has arisen, he has fearlessly exposed and denounced humbug in education. In a paper on The Higher Education, published in the seventh volume of the Popular Science Monthly, having defined the purpose of true education as being "to develop the mind; to strengthen the thinking faculties in every possible direction; to render the acquisition of new knowledge easier and surer; to increase the student's resources; and to render him better fitted for dealing with the useful affairs of the world," he sets forth the advantages of science over the ancient and even the modern languages for the accomplishment of it. Science, he reasons, furnishes as good an instrument for cultivating the memory, and has the additional advantage of strengthening the perceptive powers too, for in it the eye, the ear, and all the instruments of the senses are trained to observe facts accurately, as they are not trained to so great a degree in language study. It again takes the lead in the cultivation of the pure reason; for it gives grand laws and generalizations already deduced or in process of deduction. "The discovery of these natural laws may be counted among the greatest achievements of the human mind. To follow out the processes by which they were discovered gives the mind its most rigid training, and elevates the tone of thought in many other respects. The intellect becomes self-reliant and yet conscious of its own weak points." Also, in æsthetic development, scientific education is put foremost. "The true student of Nature and her phenomena ever sees order and symmetry coming out of chaos, and finds the rarest beauty hidden where to the unaided eye naught but ugliness exists.... Can any student, who looks upon the universe with vision thus unobscured, fail to find in his studies the truest æsthetic culture?" But it had been alleged that the scientific courses had been tried in many American colleges and found less fruitful than the classical. In answer to this the author considered the character of most American colleges, the qualifications of many professed teachers and the methods of study, and showed that these, as they actually were, were not competent for the conveyance of genuine scientific instruction.

By the multiplication of competing colleges putting sectarian interests in the foremost place, the means were divided up and frittered away, which, concentrated in one institution, would hardly be enough to enable it to do really effective work. "Each college acts as a drag on all the others. Libraries, cabinets, and faculties are uselessly duplicated. Naturally, one result of this state of affairs is a lowering of educational standards.... Since, on account of this foolish division of forces, most of these colleges are inadequately endowed, they are compelled to work short-handed. One professor has frequently several branches to teach.... In the majority of cases there is a chair of Latin, a chair of Greek, and then—a chair of 'Natural Science.' Each linguistic professor is to some degree a specialist; while the one who teaches science is perforce compelled to be a smatterer. He is expected to teach half a dozen dissimilar branches, each one being a life work by itself. He is to be omniscient on about a thousand dollars a year."

That the character of these institutions, as well as their poverty, was detrimental to the advancement of scientific education was more fully shown in another article on American Colleges vs. American Science, in the ninth volume of the Monthly. The colleges were described as being to a large extent denominational institutions, "equipped and endowed with, due reference to the perpetuation of sound faith, and incidentally to the encouragement of what is supposed to be learning.... The very fact that a college has been established for theological purposes, or for ecclesiastical aggrandizement, is adverse to good scientific research.... Every year professors are chosen, not on account of scientific ability, but for reasons of a theological or sectarian character. If two men, one a Baptist and the other a Unitarian, were candidates for the same professorship in a Baptist university, the former, even if very much inferior to his rival, would almost certainly be elected.... Theological soundness in such an institution far outranks scientific ability. If Laplace had lived in America, no college would have tolerated him for an instant. Almost any decayed minister, seeking an asylum, would have beaten him in the race for a professorship."

These conditions were shown to have necessarily a bad effect upon American science, and to be not likely to arouse or encourage the scientific spirit. The student "becomes accustomed to regard the sciences as comparatively unimportant," and "graduates in complete ignorance both of the methods and of the aims of science, having learned only a few disconnected facts concerning the great world about him."

Improvement in these conditions, the author argued, must come partly from within and partly from without. The colleges must reform their ways, and, not being likely to do it spontaneously, must be helped—by pressure of public sentiment and, later, of legislation. This suggestion proved to be introductory to that of a very important line of work, for the furtherance of which Professor Clarke seems never to have been able to labor too earnestly and industriously.

"But how," he says, "should public sentiment be properly shaped and made available for service? How is the natural, though slow, growth to be fostered and directed? Mainly by the efforts, organized and individual, of scientific men. Personally, every worker in science should strive to awaken in the community about him a comprehension of the value and purposes of his particular branch. In other words, the real investigators ought to do more toward popularizing their discoveries instead of leaving that task to amateurs or charlatans. At present, unfortunately, too many able scientific men depreciate popular work and hold aloof from it. They do nothing themselves to interest the public, and then lament the fact that the public does not become interested. Yet just here is where the beginning must be made. With a wider public interest in science will come deeper public appreciation, and this will develop the tendencies necessary for the improvement of our colleges and schools. Until the people see and recognize the difference between true investigators and mere collectors of specimens, between original workers and text-book authors, little real progress will be made."

While these pictures were correct, when made, of a very large number of American colleges, a vast improvement has taken place since the articles were written in the quality of instruction given; but there yet remain too many institutions to which they are still not inapplicable.

This was not the beginning of Professor Clarke's efforts to show men of science that the true interests of their cause lay in their making their knowledge easily accessible to the public. In the first volume of the Monthly he had an article on Scientific Dabblers, the purpose of which, as he defined it, was, after calling attention to the silly character of much that was called "popular science," to urge upon true scientific men the importance of rendering real knowledge more accessible to the masses. There is a demand for science, he said, "or the trash which is written would not be read. It works into nearly all departments of common life, and is, in one way or another, of interest to almost every one. Yet, as I have already said, the current popular lectures upon scientific topics are frothy and worthless; the theologian often misrepresents science for partisan purposes; and the newspapers, with all the good they may do, are too frequently conducted by those ignorant of all science. The people ask for knowledge, and unwittingly get much chaff with their wheat.... Therefore it seems to be time that true students of science should seek to popularize their learning.... Men of science constantly lament that the Government does not extend more aid to scientific research. The Government is a popular one, and the people must be trained before its help can be expected. Therefore it is for the interest of the teachers, as well as for the good of the people, that scientific truths should be popularly put forward in simple, untechnical language, and made accessible to all."