A journey of nine days brought them to the hospitable house of the Reverend Mr. Davenport, where again they moved freely in the society of the ministers and the magistrates. But they had scarcely been at New Haven three weeks, when tidings came thither of the reception at Boston of a proclamation issued by the King for their arrest. To release their host from responsibility, they went to Milford, (as if on their way to New Netherland,) and there showed themselves in public; but returned secretly the same night to New Haven, and were concealed in Davenport's house. This was towards the last of March.

They had been so situated a month, when their friends had information from Boston that the search for them was to be undertaken in earnest. Further accounts of their having been seen in that place had reached England, and the King had sent a peremptory order to the Colonial governments for their apprehension. Endicott, to whom it was transmitted, could do no less than appear to interest himself to execute it; and this he might do with the less reluctance, because, under the circumstances, there was small likelihood that his exertions would be effectual. Two young English merchants, Thomas Kellond and Thomas Kirk, received from him a commission to prosecute the search in Massachusetts, and were also furnished with letters of recommendation to the Governors of the other Colonies. That they were zealous Royalists, direct from England, would be some evidence to the home government that the quest would be pursued in good faith. That they were foreigners, unacquainted with the roads and with the habits of the country, and betraying themselves by their deportment wherever they should go in New England, would afford comfortable assurance to the Governor that they would pursue their quest in vain.

From Boston, the pursuivants, early in May, went to Hartford, where they were informed by Winthrop, Governor of Connecticut, that "the Colonels," as they were called, had passed thence immediately before, on their way to New Haven. Thither the messengers proceeded, stopping on the way at Guilford, the residence of Deputy-Governor Leete. Since the recent death of Governor Newman, Leete had been Chief Magistrate of the Colony of New Haven, which was now, and for a few years later, distinct from Connecticut.

The Deputy-Governor received them in the presence of several other persons. He looked over their papers, and then "began to read them audibly; whereupon we told him," say the messengers, "it was convenient to be more private in such concernments as that was." They desired to be furnished "with horses, &c.," for their further journey, "which was prepared with some delays." They were accosted, on coming out, by a person who told them that the Colonels were secreted at Mr. Davenport's, "and that, without all question, Deputy Leete knew as much"; and that "in the head of a company in the field a-training," it had lately been "openly spoken by them, that, if they had but two hundred friends that would stand by them, they would not care for Old or New England."

The messengers returned to Leete, and made an application for "aid and a power to search and apprehend" the fugitives. "He refused to give any power to apprehend them, nor order any other, and said he could do nothing until he had spoken with one Mr. Gilbert and the rest of his magistrates." New Haven, the seat of government of the Colony, was twenty miles distant from Guilford. It was now Saturday afternoon, and for a New-England Governor to break the Sabbath by setting off on a journey, or by procuring horses for any other traveller, was impossible. An Indian was observed to have left Guilford while the parley was going on, and was supposed to have gone on an errand to New Haven.

Monday morning the messengers proceeded thither. "To our certain knowledge," they write, "one John Meigs was sent a-horseback before us, and by his speedy and unexpected going so early before day was to give them an information, and the rather because by the delays was used, it was break of day before we got to horse; so he got there before us. Upon our suspicion, we required the Deputy that the said John Meigs might be examined what his business was, that might occasion so early going; to which the Deputy answered, that he did not know any such thing, and refused to examine him." Leete was in no haste to make his own journey to the capital. It was for the messengers to judge whether they would use such despatch as to give an alarm there some time before any magistrate was present, to be invoked for aid. He arrived, they write, "within two hours, or thereabouts, after us and came to us to the Court chamber, where we again acquainted him with the information we had received, and that we had cause to believe they [the fugitives] were concealed in New Haven, and thereupon we required his assistance and aid for their apprehension; to which he answered, that he did not believe they were; whereupon we desired him to empower us, or order others for it; to which he gave us this answer, the he could not, or would not, make us magistrates... We set before him the danger of that delay and their inevitable escape, and how much the honor and service of his Majesty was despised and trampled on by him, and that we supposed by his unwillingness to assist in the apprehension he was willing they should escape. After which he left us, and went to several of the magistrates, and were together five or six hours in consultation, and upon breaking up of their council they told us they would not nor could not to anything until they had called a General Court of the freemen."

The messengers labored with great earnestness to shake this determination, but all in vain. For precedents they appealed to the promptness of the Governors of Massachusetts and Connecticut, "who, upon the recite of his Majesty's pleasure and order concerning the said persons, stood not upon such niceties and formalities." They represented "how much the honor and justice of his Majesty was concerned, and how ill his Sacred Majesty would resent such horrid and detestable concealments and abettings of such traitors and regicides as they were, and asked him whether he would honor and obey the King or no in this affair, and set before him the danger which by law is incurred by any one that conceals or abets traitors; to which the Deputy Leete answered, 'We honor his Majesty, but we have tender consciences'; to which we replied, that we believed that he knew where they were, and only pretended tenderness of conscience for a refusal.... We told them that for their respect to two traitors they would do themselves injury, and possibly ruin themselves and the whole Colony of New Haven."

"Finding them obstinate and pertinacious in their contempt of his Majesty," the messengers, probably misled by some false information, took the road to New Netherland, the next day, in further prosecution of their business. The Dutch Governor at that place promised them, that, if the Colonels appeared within his jurisdiction, he would give notice to Endicott, and take measures to prevent their escape by sea. Thereupon Kellond and Kirk returned by water to Boston, where they made oath before the magistrates to a report of their proceedings.

The fugitives had received timely notice of the chase. A week before Kellond and Kirk left Boston, they removed from Mr. Davenport's house to that of William Jones, son-in-law of Governor Eaton, and afterwards Deputy-Governor of Connecticut. On the day when the messengers were debating with Governor Leete at Guilford, Whalley and Goffe were conducted to a mill, at a short distance from New Haven, where they were hidden two days and nights. Thence they were led to a spot called Hatchet Harbor, about as much farther in a northwesterly direction, where they lay two nights more. Meantime, for fear of the effect of the large rewards which the messengers had offered for their capture, a more secure hiding-place had been provided for them in a hollow on the east side of West Rock, five miles from the town. In this retreat they remained four weeks, being supplied with food from a lonely farm-house in the neighborhood, to which they also sometimes withdrew in stormy weather. They caused the Deputy-Governor to be informed of their hiding-place; and on hearing that Mr. Davenport was in danger from a suspicion of harboring them, they left it, and for a week or two showed themselves at different times at New Haven and elsewhere. After two months more of concealment in their retreat on the side of West Bock, they betook themselves, just after the middle of August, to the house of one Tomkins, in or near Milford. There they remained in complete secrecy for two years, after which time they indulged themselves in more freedom, and even conducted the devotions of a few neighbors assembled in their chamber.

But the arrival at Boston of Commissioners from the King with extraordinary powers was now expected, and it was likely that they would be charged to institute a new search, which might endanger the fugitives, and would certainly be embarrassing to their protectors. Just at this time a feud in the churches of Hartford and Wethersfield had led to an emigration to a spot of fertile meadow forty miles farther up the river. Mr. Russell, hitherto minister of Wethersfield, accompanied the new settlers as their pastor. The General Court gave their town the name of Hadley. In this remotest northwestern frontier of New England a refuge was prepared for the fugitives. On hearing of the arrival of the Commissioners at Boston, they withdrew to their cave; but some Indians in hunting observed that it had been occupied, and its secrecy could no longer be counted on. They consequently directed their steps towards Hadley, travelling only by night, and there, in the month of October, 1664, were received into the house of Mr. Russell.