By the time they reached the mouth of the Zambesi, Livingstone was suffering from a severe attack of diarrhoea. On the 16th of May, being Sunday, while still suffering, he deemed it a work of necessity, in order to get as soon as possible out of the fever-breeding region of mangrove swamps where they had anchored, that they should at remove the sections of the "Ma-Robert" from the "Pearl"; accordingly, with the exception of the time occupied in the usual prayers, that day was spent in labor. His constant regard for the day of rest and great unwillingness to engage in labor then, is the best proof that on this occasion the necessity for working was to his mind absolutely irresistible. He had found that active exercise every day was one of the best preventives of fever; certainly it is very remarkable how thoroughly the men of the Expedition escaped it at this time. In his Journal he says: "After the experience gained by Dr. M'William, and communicated to the world in his admirable Medical History of the Niger Expedition, I should have considered myself personally guilty had any of the crew of the 'Pearl' or of the Expedition been cut off through delay in the mangrove swamps." Afterward, when Mrs. Livingstone died during a long but unavoidable delay at Shupanga, a little farther up, he was more than ever convinced that he had acted rightly. But some of his friends were troubled, and many reflections were thrown on him, especially by those who bore him no good-will.

The first important fact in the history of the Expedition was the discovery of the advantage of the Kongone entrance of the Zambesi, the best of all the mouths of the river for navigation. Soon after a site was fixed on as a depôt, and while the luggage and stores were being landed at it, there occurred an unfortunate collision with the naval officer, who tendered his resignation. At first Livingstone declined to accept of it, but on its being tendered a second time he allowed the officer to go. It vexed him to the last degree to have this difference so early, nor did he part with the officer without much forbearance and anxiety to ward off the breach. In his despatches to Government the whole circumstances were fully detailed. Letters to Mr. Maclear and other private friends give a still more detailed narrative. In a few quarters blame was cast upon him, and in the Cape newspapers the affair was much commented on. In due time there came a reply from Lord Malmesbury, then Foreign Secretary, dated 26th April, 1859, to the effect that after full inquiry by himself, and after consulting with the Admiralty, his opinion was that the officer had failed to clear himself, and that Dr. Livingstone's proceedings were fully approved. Livingstone had received authority to stop the pay of any member of the Expedition that should prove unsatisfactory; this, of course, subjected his conduct to the severer criticism.

When the officer left, Livingstone calmly took his place, adding the charge of the ship to his other duties. This step would appear alike rash and presumptuous, did we not know that he never undertook any work without full deliberation, and did we not remember that in the course of three sea-voyages which he had performed he had had opportunities of seeing how a ship was managed--opportunities of which, no doubt, with his great activity of mind, he had availed himself most thoroughly. The facility with which he could assume a new function, and do its duties as if he had been accustomed to it all his life, was one of the most remarkable things about him. His chief regret in taking the new burden was, that it would limit his intercourse with the natives, and prevent him from doing as much missionary work as he desired. Writing soon after to Miss Whately, of Dublin, he says: "It was imagined we could not help ourselves, but I took the task of navigating on myself, and have conducted the steamer over 1600 miles, though as far as my likings go, I would as soon drive a cab in November fogs in London as be 'skipper' in this hot sun; but I shall go through with it as a duty." To his friend Mr. Young he makes humorous reference to his awkwardness in nautical language: "My great difficulty is calling out 'starboard' when I mean 'port,' and feeling crusty when I see the helmsman putting the helm the wrong way."

Another difficulty arose from the state of the country north of the Zambesi, in consequence of the natives having rebelled against the Portuguese and being in a state of war. Livingstone was cautioned that he would be attacked if he ventured to penetrate into the country. He resolved to keep out of the quarrel, but to push on in spite of it. At one time his party, being mistaken for Portuguese, were on the point of being fired on, but on Livingstone shouting out that they were English the natives let them alone. On reaching Tette he found his old followers in ecstasies at seeing him; the Portuguese Government had done nothing for them, but Major Sicard, the excellent Governor of Tette, had helped them to find employment and maintain themselves. Thirty had died of small-pox; six had been killed by an unfriendly chief. When the survivors saw Dr. Livingstone, they said: "The Tette people often taunted us by saying, 'Your Englishman will never return;' but we trusted you, and now we shall sleep." It gave Livingstone a new hold on them and on the natives generally, that he had proved true to his promise, and had come back as he had said. As the men had found ways of living at Tette, Livingstone was not obliged to take them to their home immediately.

One of his first endeavors after reaching Tette was to ascertain how far the navigation of the Zambesi was impeded by the rapids at Kebrabasa, between twenty and thirty miles above Tette, which he had heard of but not seen on his journey from Linyanti to Quilimane. The distance was short and the enterprise apparently easy, but in reality it presented such difficulties as only his dogged perseverance could have overcome. After he had been twice at the rapids, and when he believed he had seen the whole, he accidentally learned, after a day's march on the way home, that there was another rapid which he had not yet seen. Determined to see all, he returned, with Dr. Kirk and four Makololo, and it was on this occasion that his followers, showing the blisters on their feet burst by the hot rocks, told him, when he urged them to make another effort, that hitherto they had always believed he had a heart, but now they saw he had none, and wondered if he were mad. Leaving them, he and Dr. Kirk pushed on alone; but their boots and clothes were destroyed; in three hours they made but a mile. Next day, however, they gained their point and saw the rapid. It was plain to Dr. Livingstone that had he taken this route in 1856, instead of through the level Shidina country, he must have perished. The party were of opinion that when the river was in full flood the rapids might be navigated, and this opinion was confirmed on a subsequent visit paid by Mr. Charles Livingstone and Mr. Baines during the rainy season. But the "Ma-Robert" with its single engine had not power to make way. It was resolved to apply to Her Majesty's Government for a more suitable vessel to carry them up the country, stores and all. Until the answer should come to this application, Dr. Livingstone could not return with his Makololo to their own country.

While making this application, he was preparing another string for his bow. He wrote to his friend Mr. James Young that if Government refused he would get a vessel at his own expense, and in a succession of letters authorized him to spend £2000 of his own money in the purchase of a suitable ship. Eventually, both suggestions were carried into effect. The Government gave the "Pioneer" for the navigation of the Zambesi and lower Shiré; Livingstone procured the "Lady Nyassa" for the Lake (where, however, she never floated), but the cost was more than £6000--the greater part, indeed, of the profits of his book.

The "Ma-Robert," which had promised so well at first, now turned out a great disappointment. Her consumption of fuel was enormous; her furnace had to be lighted hours before the steam was serviceable; she snorted so horribly that they called her "The Asthmatic," and after all she made so little progress that canoes could easily pass her. Having taken much interest in the purchase of the vessel, and thought he was getting a great bargain because its owner professed to do so much through "love of the cause," Livingstone was greatly mortified when he found he had got an inferior and unworthy article; and many a joke he made, as well as remarks of a more serious kind, in connection with the manner which the "eminent shipbuilder" had taken to show his love.

Early in 1859 the exploration of the Shiré was begun--a river hitherto absolutely unknown. The country around was rich and fertile, the natives not unfriendly, but suspicious. They had probably never been visited before but by man-stealers, and had never seen Europeans. The Shiré Valley was inhabited by the Manganja, a very warlike race. Some days' journey above the junction with the Zambesi, where the Shiré issues from the mountains, the progress of the party was stopped by rapids, to which they gave the name of the "Murchison Cataracts." It seemed in vain to penetrate among the people at that time without supplies, considering how suspicious they were. Crowds went along the banks watching them by day; they had guards over them all night, and these were always ready with their bows and poisoned arrows. Nevertheless, some progress was made in civilizing them, and at a future time it was hoped that further exploration might take place.

Some passages in Livingstone's private Journal give us a glimpse of the more serious thoughts that were passing through his mind at this time:

"March 3, 1859.--If we dedicate ourselves to God unreservedly He will make use of whatever peculiarities of constitution He has imparted for his own glory, and He will in answer to prayer give wisdom to guide. He will so guide as to make useful. O how far am I from that hearty devotion to God I read of in others! The Lord have mercy on me a sinner!"
"March 5th.--A woman left Tette yesterday with a cargo of slaves (20 men and 40 women) in irons to sell to St. Cruz "March 6th.--Teaching Makololo Lord's Prayer and Creed. Prayers as usual at 9-1/2 A.M. When employed in active travel, my mind becomes inactive, and the heart cold and dead, but after remaining some time quiet, the heart revives and I become more spiritually-minded. This is a mercy which I have experienced before, and when I see a matter to be duty I go on regardless of my feelings. I do trust that the Lord is with me, though the mind is engaged in other matters than the spiritual. I want my whole life to be out and out for the Divine glory, and my earnest prayer is that God may accept what his own Spirit must have implanted--the desire to glorify Him. I have been more than usually drawn out in earnest prayer of late--for the Expedition--for my family--the fear lest ----'s misrepresentation may injure the cause of Christ--the hope that I may be permitted to open this dark land to the blessed gospel. I have cast all before my God. Good Lord, have mercy upon me. Leave me not, nor forsake me. He has guided well in time past. I commit my way to Him for the future. All I have received has come from Him. Will He be pleased in mercy to use me for his glory? I have prayed for this, and Jesus himself said, 'Ask, and ye shall receive, and a host of statements to the same effect. There is a great deal of trifling frivolousness in not trusting in God. Not trusting in Him who is truth itself, faithfulness, the same yesterday, to-day, and for ever! It is presumption not to trust in Him implicitly, and yet this heart is sometimes fearfully guilty of distrust. I am ashamed to think of it. Ay; but He must put the trusting, loving, childlike spirit in by his grace. O Lord, I am Thine, truly I am Thine--take me--do what seemeth good in Thy sight with me, and give me complete resignation to Thy will in all things."