We find fire-ships at this period universally sent to sea with fleets. Sir Francis Waller, on board the Sussex, was ordered to proceed to Cadiz, and from thence to convoy the merchant-vessels he might find there to Turkey or any ports in Spain or Italy. His fleet consisted of fifteen third-rates, seven fourth-rates, one fifth-rate, six fire-ships, two bomb-vessels, a hospital-ship, and a store-ship in company with several Dutch ships of war. Having touched at Gibraltar, he again put to sea, and met with gales of wind; and ultimately, in thick weather, he with part of his fleet running to the straits mistook the entrance. The Sussex, with 550 men on board, foundered, two Moors only escaping. The admiral’s body was afterwards discovered on shore much mangled. Besides this loss, 409 were drowned belonging to various ships which were either driven on shore or foundered. Among them was the Cambridge, a ship of 70 guns, and the Lumley Castle.

On most occasions the fire-ships, being generally old vessels fit for no other purpose, were the chief sufferers. A Dutch ship of 70 guns ran on shore, but was got off again, as were several other ships; indeed, few escaped without much damage. This was the most violent storm that had ever been known in those seas since the memory of man.

William was now taking measures for retrieving the honour of the British Flag, and appointed Admiral Russell commander-in-chief of the navy, and several other eminent officers to form a new commission of admiralty. He also, finding that the pay of sea-officers was less than that of other countries, directed that the sea pay of flag-officers, commanders, lieutenants, masters, and surgeons should be doubled; as also that all flag-officers and captains of first, second, third, fourth, and fifth-rate ships, and also the masters of first, second, and third-rates, who had served a year in the same post in the ships of those rates, or been in a general engagement, should have half-pay while on shore, to be paid quarterly out of the general estimate of the navy. From this it is evident that they before this time, as also those of other ranks, received no half-pay while on shore. It was also ordered that only such commissioned officers as had been put in by the Admiralty, and warrant officers as had been put in by the Navy Board, should receive the benefit of half-pay; that half-pay officers be expected to assist the Navy Board; that no convoy money be demanded or received under the penalty of forfeiting and losing employment for ever; that the commanders transmit to the Admiralty when and why they came into port.

The French had not abandoned their design of restoring James the Second to the throne. He had abdicated, and in 1696, while most of the British ships were laid up, and the rest were employed in the protection of the trade up the Mediterranean, it was discovered that 500 transports were in Dunkirk ready to take on board an army of 20,000 men, under the escort of fifteen sail of men-of-war, for the invasion of England. While these preparations were making, and every ship was of consequence, the Royal Sovereign, laid up at Chatham to be rebuilt, took fire, and was totally consumed. She was the first great ship that ever was built in England. The great object then was only to exhibit as much splendour and magnificence as possible. In the reign of Charles the Second, however, being taken down a deck lower, she became one of the best men-of-war in the world, and so formidable to her enemies, that none of the most daring among them would willingly lie by her side. She had been in almost all the great engagements that had been fought between England and Holland, and in the last fight between the English and French, when she compelled the Soleil Royal to fly for shelter among the rocks. At length, leaky and defective with age, she was laid up at Chatham, in order, as has been said, to be rebuilt.

In the year 1691 the first mention is made of a regular regiment of marines being raised to serve on board ship. In this year one dry and two wet docks were ordered to be constructed at Portsmouth, and orders were given to survey the harbour of Falmouth, and report whether it was capable of being made a proper port for the refitting and docking ships of the Royal Navy.

It was not till the year 1693 that men-of-war on the home service were allowed to carry to sea spare topmasts and sails.

In 1694 the king, by the advice of the excellent Queen Mary, granted the royal palace of Greenwich to be converted into a hospital for decayed seamen in the Royal Navy. Sir Christopher Wren was appointed as architect, and an annual sum of money was granted to complete and extend the buildings. The foundation of the first new building was laid on the 3rd of June, 1696.

In the same year the landmark on the beach at Stoke, near Gosport, called the Kicker, was erected, and the buoy of the horse placed at Spithead, for the better security of ships going into Portsmouth Harbour. Some docks were made at Plymouth, and storehouses, as also residences for the accommodation of the officers of the dockyard, were built.

In 1695 brass box-compasses were invented and allowed to the ships in the Royal Navy. Many ships having been wrecked upon the Eddystone Rock off Plymouth, an application was made to the Trinity House to erect a lighthouse on it, which was begun to be built in 1696, and was finished in three years. Many masters and owners of ships agreed to pay one penny per ton outwards and inwards, to assist in defraying the expense.

In 1696 an Act of Parliament was passed to establish a register for 30,000 seamen, to be in readiness at all times for supplying the Royal Navy. They were to have a bounty of forty shillings yearly. None but such registered seamen were to be preferred to the rank of commissioned or warrant officers in the Royal Navy. They were likewise entitled to a double share in all prizes, and when maimed or superannuated, were admitted into Greenwich Hospital. The widows and children of such registered seamen who might be killed in the service were admissible into that hospital. It was also enacted that sixpence per month should be deducted from the wages of all seamen both in the merchant-service as well as in the Royal Navy, for the support of Greenwich Hospital.