'The love of kings is like the blowing of winds
... or the sea which makes
Men hoist their sails in a flattering calm,
And to cut their masts in a rough storm.'

Johnson.

This coup d'etat left Melville and the other exiled brethren free to return to Scotland, as they did in November 1585. During his stay of nearly two years in England Melville had not been idle. He carried on a correspondence with Protestant ministers in France and Switzerland for the purpose of correcting misrepresentations which Archbishop Adamson had been industriously circulating among them in regard to the conduct of the ministers in Scotland. In all its struggles, from the Reformation to the time of Renwick, the Scottish Church sought to keep the churches of the Continent informed of its affairs and to secure their sympathy. When in London Melville diligently used his influence with leading English statesmen in favour of the cause which he represented. He also took advantage of his proximity to Oxford and Cambridge to visit those Universities, where he was received with the greatest courtesy and respect.

The other ministers who had fled to England had likewise been fully occupied; they had preached in Berwick, in Newcastle, in London, and wherever they found an open door. James Melville had, for a while, most of the banished Ruthven lords in his congregation at Newcastle, and he had sought to invigorate them as the supporters of the liberties of the Church in the event of their returning home to take part again in political life; but, as it proved, with little effect.

The Church soon found that it had gained little by the change of Government. If Arran and his set were its bitter enemies, the new Councillors, the Ruthven lords, were, at the best, indifferent friends. Though they owed their restored power largely to the courageous resistance of the ministers to the Arran administration, and though they had pledged themselves during their exile to use their influence, when opportunity should come, to undo the evils of that administration as they had affected the Church, they were content to secure their own interest and left the Church to look after itself.

Parliament having been summoned to meet in Linlithgow in December 1585, for the purpose of reponing the nobles in their estates and giving its sanction to their administration, the ministers resolved to hold a meeting of Assembly beforehand in Dunfermline to prepare a representation of the Church's interests for the Parliament. When the members of Assembly reached that city they found that the Provost had closed the gates against them, by order, it was said, of the Court. The meeting was held, but adjourned, after resolving that it should be resumed at Linlithgow. James Melville, fresh from his journey from England, arrived in Linlithgow on the eve of the Assembly, and found his brethren much dispirited. They had almost come to a rupture among themselves, high words having passed between those of them who had subscribed the deed of submission to the bishops and those who had refused. This dispute had caused much trouble to Andrew Melville. In a letter of James Melville written at the time to a friend, he says: 'Mr. Andro hath been a traicked[14] man since he cam hame, ryding up and doun all the countrie to see if he might move the brethren to repent and joyne together.' The Assembly had little hope of Parliament doing anything towards the repeal of the Black Acts. If the nobles now in power would not press the King to redress the Church's grievances, it was certain that he would do nothing in that direction of his own accord. James was not in a mood to oblige the Church. He could not conceal his revengeful feelings towards the ministers who had fled with the Ruthven lords, and especially towards Melville. The Assembly, however, did its duty. It sent a deputation to the nobles to urge them to put the Church's claims before the King. The nobles refused, and the deputation went to the King himself. Melville was its spokesman, and many sharp and hot words passed between him and James. At length the King ordered the Assembly to lay before him a statement of its objections to the Black Acts. This was done, and within twenty-four hours James issued a reply from his own pen, in which he showed a conciliatory spirit, and made explanations to take the edge off the harshness with which the Acts had been framed, but made no alteration in their substance.

If Parliament did not know when to take occasion by the hand to win concessions from the King in the interests of liberty, he knew how to use his opportunity for strengthening his own prerogatives. He brought forward a measure which the Parliament passed, constituting it a capital offence to criticise the King's conduct or government, and making it unlawful for his subjects to enter into any association for political ends without the consent of the throne.

At this time a fresh casus belli between the Church and the Crown arose through the Church's severe but well-merited handling of Archbishop Adamson. No man in the kingdom was more responsible for the recent troubles than Adamson, except Arran, whom he encouraged and supported in all his arbitrary measures. The minister of the Church who first opened fire on the Archbishop was James Melville. He had consulted beforehand with his uncle; but those who think he was too amiable to have any fight in him, or that on this or any other occasion he was only doing his uncle's bidding, do not know the man. His courage was as great as his uncle's, if he had a milder manner and a calmer temper; and his action on this occasion was the irrepressible outburst of his honest indignation at Adamson's treachery in the affairs of the Church ever since his elevation to the See of St. Andrews.

In March 1586 the Synod of Fife met at St. Andrews, and James Melville as the retiring Moderator had to preach the opening sermon. It was a full meeting. The Archbishop with a 'grait pontificalite and big countenance' was seated by the preacher's side. The subject of discourse was the evil that had been done to the Church from the time of its planting by the ambitious spirit and corrupt lives of men holding its highest offices. On reaching his application, the preacher, turning to the Archbishop and directing his speech to him personally, recalled his long course of disloyalty to the Church and his persistent efforts to overthrow its discipline, as well as all the injuries he had done to religion by his avarice and ambition: he spoke of him as a dangerous member who needed to be courageously cut off in order to save the body; and then, addressing himself to the Assembly, exhorted it to 'play the chirurgeon!' This bold and unexpected attack unmanned the Archbishop—'he was sa dashit and strucken with terror and trembling that he could skarse sitt, to let be stand on his feet.' It was manifest that the Moderator had the whole House at his back, and it at once entered on a process against Adamson. At first he declined its jurisdiction, boasting that it was rather his place to judge the Assembly. At length, however, he condescended to defend himself; and the process ended in his excommunication. A day or two after he retaliated by excommunicating, on his own authority, within his own church, Andrew Melville and other brethren. He also despatched to the King an appeal against the Synod's sentence, defying the sentence at the same time by appearing in his own pulpit on the following Sabbath. On the same Sabbath Melville was preaching in his own college chapel to a crowded congregation; and a neighbouring laird, with a number of his friends, having come to the city on that Sabbath to hear Melville, there was an unusual stir which drew most of the townsfolk to the chapel. When the last bell was ringing, and Adamson was about to enter the pulpit, a canard reached him to the effect that a body of local gentry and the citizens gathered within the college gates had formed a conspiracy to seize him and hang him on the spot. Calling to his servants to guard him, he ran out of the church and sought refuge in the steeple, and it took the magistrates all their skill to persuade him to leave his hiding-place and accept their convoy to the palace—'he was halff against his will ruggit[15] out, and halff borne and careit away' amid the derision of the onlookers.

Adamson had appealed to the Assembly which was to meet in May. The King, being indignant at the treatment the Archbishop had received, was resolved to get the sentence annulled, and he set himself to tune the Assembly to his mind. He called a meeting by royal proclamation, and gave it out that he would attend it himself. The temper of the Assembly was such that the resolutions that were to effect the King's object had to be cautiously framed, and were carried by a bare majority of votes. The Court, without judging the Synod's proceedings and sentence, and only after Adamson had made an apology for his pretentions to authority in the Church, and had given a promise to drop them for the future, resolved to restore him. The case had been no sooner disposed of than Melville was summoned before the King and commanded to go into ward north of the Tay, that the Archbishop might have a better chance of recovering his lost prestige—a restriction which, however, was soon removed on a strong representation being made to the King of the loss which the University was suffering by the banishment of Melville.