The King was absent from the city at the time attending the marriage festivities of the Earl of Mar, and an urgent request was sent to him by the ministers of Edinburgh and his own Council to return and take steps to bring the conspirators to justice. James, instead of thanking the ministers and councillors for their diligence in the matter, blamed them for their super-serviceableness, and so gave the impression that he was in sympathy with the plot. Kerr himself, in a letter to the King, went the length of saying that he and his friends had no doubt that they would have his countenance in their enterprise; and Calderwood says:—'It appeareth the chief conspirators have had his [the King's] expresse or tacite consent, or at least have perceaved him inclyned that way, whereupon they have presumed.' Events confirmed the suspicion, if it wanted confirmation, of James's secret leanings to the party that had been guilty of treason. Only one of them—Graham, the most insignificant of their number—paid the penalty of his crime; Kerr and the Earl of Angus escaped from prison with the connivance of the authorities; Huntly, who had been summoned to stand trial before the Privy Council, retired to his own territory and defied the Government, and it was only when he could no longer resist the popular will that the King took action against him. At the head of a considerable force, James set out to seize him; but when the army reached Aberdeen it was found that the Earl had retired further north to the Caithness moors. The subsequent treatment of the rebel lords showed that the King had no heart in their prosecution—indeed, in an unguarded moment, while conversing with one of the few nobles who were reckoned friends of the Protestant cause, Lord Hamilton, he let out this fact. Had it not been for the pressure of the ministers, nothing would have been done. James trifled with the business: he scolded and coaxed the ministers in turn; he threatened them, and then gave way and promised to bring the offenders to trial, but still made no move; he allowed the conspirators to appear in public and to have interviews with himself in which he made it apparent that they had little to fear at his hands; he tampered with his own law officers in the traitors' interest; and through his influence with Parliament they were virtually absolved and their forfeitures cancelled. But the ministers were stronger and far more really representative of the nation than the Parliament—a fact which markedly characterises this long crucial period of Scottish history, and which must always be borne in mind for a right understanding of events.

The two Melvilles took the lead in the Church's action. At the Synod of Fife, September 1593, excommunication was pronounced on the Popish lords; and steps were taken to hold an early meeting in Edinburgh of commissioners from the counties to adopt such measures as would secure the ends of justice. At this convention, delegates were appointed to meet with the King and represent to him the necessity of taking vigorous action against the lords. The interview took place at Jedburgh, where the King had gone to repress some Border tumult. 'We war bot bauchlie[19] lukit upon,' says James Melville, who was one of the delegates.—'Our Assembly of Fife was bitterly inveyit against, namlie my uncle Mr. Andro and Mr. David Black.' Before the interview closed, the King became more gracious, and he dismissed the delegates with fair promises; but his real answer was the subsequent passing through Parliament of an Act of Oblivion in favour of the lords, which he urged on the unkingly ground that, if severe measures were taken against them, they would go 'to armes and get forean assistance quhilk might wrack King, Country, and Relligion.'

Parliament had given way to the King: but the ministers kept their ground. The Assembly of May 1594 ratified the deed of the Synod of Fife in excommunicating the Popish lords, and appointed another commission to meet with the King and urge him in the matter, James Melville being again one of the delegates and their spokesman. The manner in which the King received them was very different from that in which he had received the deputation at Jedburgh, and surprised them by its friendliness. He expressed his regret at the misunderstandings that had arisen between himself and the Church, heard the statements of the delegates with apparent favour, and promised to summon Parliament for the earliest convenient day to take measures for the punishment of the excommunicated lords. At the close of the conference the King detained James Melville for a private interview, and sent through him a friendly message to his uncle, acknowledging both to be most faithful and trusty subjects. From this time, for the space of two years, James Melville by the King's command went a great deal about the Court. 'Courting' did not go with his heart, but he was reconciled to it by the hope that he might be of service in bringing the King into better relations with the Church. The King's motive in inviting him to Court may be inferred from an incident which occurred one day when he had been conferring with the King on Church affairs. As Melville left the room the King was overheard saying to a courtier, 'I have streaked his mouth with cream.' James little knew the man, than whom there was not among his subjects one less likely to be seduced from his convictions by a king's flattery or favours. When the King found after a two years' trial that he was untamable, James Melville's 'Courting' days ceased.

The King's change of policy in the business concerned and his adoption of a more conciliatory attitude to the ministers are not difficult to explain. He had come to realise that they were too strong for him: they had the country with them, while towards himself there was a universal feeling of suspicion and discontent. Moreover, the ministers had a strong ally in Queen Elizabeth, who continued to make angry remonstrances with James on his treatment of the rebel lords. In one stinging letter she said 'she could only pray for him, and leave him to himself. She did not know whether sorrow or shame had the upper hand, when she had learned that he had let those escape against whom he had such evident proof. Lord! what wonder grew in her that he should correct them with benefits and simply banished them to those they loved. She more than smiled to read their childish, foolish, witless excuses, turning their treasons' bills to artificers' reckonings, one billet lacking only, item, so much for the cord they best merited.'[20]

James dared not longer defy the feeling of the country, and accordingly Parliament was summoned in June 1594 and the trial of the Popish lords proceeded with, the King professing the greatest zeal in it, and declaring that, as he had found 'plaister and medicine' unavailing in dealing with the traitors, he would now 'use fire as the last remedie.' It fell to Parliament to choose those who composed the court in trials for treason—the Lords of the Articles they were called,—and some of those who were chosen on this occasion were notoriously tainted with treason themselves. Melville, who was present in the Parliament as a commissioner of the Church, attended the opening of the court, and, addressing the King and the judges, admonished them to deal with the cause as the laws of the realm and the safety of the country required. 'It is true,' he said, 'manie thinke it a mater of great weight to overthrow the estate of three so great men. I grant it is so: yitt it is a greater mater to overthrow and expell out of this countrie three farre greater; to witt, true religioun, the quietnesse of the commoun weale, and the King's prosperous estat.' He then challenged the composition of the court: '"There come some heere to reasoun who have no interest, but ought to be excluded by all law,"—meaning of the Pryour of Pluscardie, brother to the Lord Setoun, who was after made chanceller. Some answered, that he was a man of honorable place, President of the Sessioun. Mr. Andrew answered, more honorable were debarred from place among the Lords of the Articles. The King confessed it was true, and promised it sould be amended. "Nixt," said Mr. Andrew, "there are some on the Articles justlie suspected partiall, and almost als guiltie as the persons that are to be tryed." The Abbot of Inchaffrey and Mr. Edward Bruce sitting together laughed. The King asked at Mr. Andrew who it was that was suspected? Mr. Andrew said, "One laughing there." Mr. Edward asked if he meant of him. Mr. Andrew answered, "If yee confesse your self guiltie, I will not purge you: but I meant of Inchaffrey there, beside you." The King sayeth to Mr. Edward, "That is Judas' questioun, 'Is it I, Maister?'"—whereat was muche laughter.'

The forfeiture of the lords was agreed to, all but unanimously. But it was easier to pronounce this sentence than to execute it. Huntly, the chief traitor, defied the Government from his stronghold in the North, where he was all-powerful. The Crown had no standing army, and depended in military undertakings on the great feudal lords, one of the greatest of whom, Argyle, the potentate of the West Highlands, was ready to take the field against his rival, Huntly, in the North. He invaded the Gordon district with a strong force, but was beaten by Huntly at Glenlivet. The Crown then raised an army of its own, by proclamation, and the King marched north with the force, accompanied on his own command by the two Melvilles, that their presence might be a pledge to the country of his sincerity and zeal in the business. On the army reaching Aberdeen, it was found that Huntly and his friends had again fled to Caithness, and it was resolved to go on to the district of the rebels and demolish their strongholds. The weather was so severe, however, that the army could not move out of Aberdeen for a whole month; and by that time all the money the King had in hand for the expense of the war was exhausted, and it became necessary to raise more. The means he took to do this showed his estimate of the ministers' hold on the country. He sent James Melville south to enlist their services in procuring the money, and with him a letter in his own hand to the ministers of Edinburgh, whom he addressed as his 'trusty friends,' in which he made a fervent appeal to them to rouse the burgesses to do their duty in the matter, and declared that, rather than that there should be any miscarriage of justice, he would 'give crown, life, and all else God had put into his hands.'

The King's message had been no sooner despatched than a difference of opinion arose among his advisers as to the course to be pursued with the rebels. A majority was in favour of taking no further action, while Melville vehemently urged that the army should advance into Huntly's territory and overthrow his chief stronghold, the castle of Strathbogie. The King could better afford to differ from the Council than from Melville, whose advice he adopted and at once put into execution; and when the rebels heard of the destruction of Strathbogie, they believed that at last the King was serious in the business, and Huntly and his friends fled from the country in despair.

This expedition took place in the fall of 1594. Before another year was over the King's attitude towards the Church was again hostile, or rather, his latent hostility began to be again evident and active. The removal from the Court of the Chancellor about this time, through an illness of which he soon died, so far accounts for the King's relapse in his relations with the ministers, as for some time Maitland's influence had been used in encouraging him to cultivate their friendship.

In 1595, the King incurred one of those periodic explosions of Melville's indignation, which were provoked by his own incurable distrust of the ministers, and his persistent effort to deprive them of liberty of speech in the pulpit. Mr. David Black of St. Andrews, one of the most zealous and honoured ministers of the Church, had made an enemy of Balfour of Burley, who has already been referred to in connection with outrages on citizens of St. Andrews. In revenge, Balfour raised calumnious charges against Black of disloyal utterances in the pulpit, and got them conveyed, through acquaintances among the courtiers, to the King's ears; Melville, as his friend, and as having been the means of bringing him to the city, being also reported to the King as involved in his offences. The two were summoned to appear before the King and Council at Falkland to answer the accusations that had been made against them. While Black and his accusers were being heard, Melville, who had not been called, and who was determined that he would see justice done to his friend, knocking at the door, burst into the Council Chamber, 'and efter humble reverence done to the King, he braks out with grait libertie of speitche, letting the King planlie to knaw, that quhilk dyvers tymes befor, with small lyking, he haid tooned in his ear, "Thait thair was twa Kings in Scotland, twa Kingdomes, and twa Jurisdictiones: Thir was Chryst Jesus, etc.: And gif the King of Scotland, civill King James the Saxt, haid anie judicator or cause thair, presentlie, it sould nocht be to judge the fathfull messanger of Jesus Chryst, the King, etc., bot (turning him to the Lard of Burley, standing there) this trator, wha hes committed divers poinets of his treasone against his Majestie's civill lawes, to his grait dishonour and offence of his guid subjects, namlie, taking of his peacable subjects on the night out of thair housses, ravishing of weimen, and receating within his hous of the King's rebels and forfault enemies!"

'With this, Burley falles down on his knees to the King, and craves justice. "Justice!" sayes Mr. Andro, "wald to God yow haid it! Yow wald nocht be heir to bring a judgment from Chryst upon the King, and thus falslie and unjustlie to vex and accuse the fathfull servants of God!" The King began, with sum countenances and speitches, to command silence and dashe him; bot he, insurging with graitter bauldnes and force of langage, buir out the mater sa, that the King was fean to tak it upe betwix tham with gentill termes and mirrie talk; saying, "They war bathe litle men, and thair hart was at thair mouthe!"' Melville's boldness stopped the proceedings, and there and then the trial took end.