Other speculations in Biology are related to Taxonomics or Bionomics according as they deal with the structure of the dead organism or the action of the living. Anatomy and its more theoretical interpretation, morphology, are related to Taxonomics, physiology and its branches to Bionomics. In fact, the fundamental principles of physiology must be understood before the study of Bionomics can begin. We must know the essential nature of the process of respiration before we can appreciate the different modes of respiration in a whale and a fish, an aquatic insect and a crustacean. The more we know of the physiology of reproduction, the better we can understand the sexual and parental habits of different kinds of animals.
The two branches of biological study which we are contrasting cannot, however, be completely separated even by those whose studies are most specialised. In Bionomics it is necessary to distinguish the types which are observed, and often even the species, as may be illustrated by the fact that controversies occasionally arise among amateur and even professional fishermen on the question whether dog-fishes are viviparous or oviparous, the fact being that some species are the one and others the other, or the fact that the harmless slow-worm and ring-snake are dreaded and killed in the belief that they are venomous snakes. Taxonomics, on the other hand, must take account of the sex of its specimens, and the changes of structure that an individual undergoes in the course of its life, and of the different types that may be normally produced from the same parents, otherwise absurd errors are perpetrated. The young, the male, and the female of the same species have frequently been described under different names as distinct species or even genera. For example, the larva of marine crabs was formerly described as a distinct genus under the name of Zoaea, and in the earlier part of the nineteenth century a lively controversy on the question was carried on between a retired naval surgeon who hatched Zoaea from the eggs of crabs, and an eminent authority who was Professor at Oxford and a Fellow of the Royal Society, and who maintained that Zoaea was a mature and independent form. In the end taxonomy had to be altered so as to conform with the fact of development, and the name Zoaea disappeared altogether as that of an independent genus, persisting only as a convenient term for an important larval stage in the development of crabs.
These two kinds of study give us a knowledge of the animals now living. But we find it a universal rule that the individual animal is transitory, that the duration of life, though varying from a few weeks to more than a century, is limited, and that new individuals arise by reproduction, and we have no evidence that the series of successive generations has ever been interrupted; that is to say, the series in any given individual or species may come to an end; species may be exterminated, but we know of no instance of individuals coming into existence except by the process of reproduction or generation from pre-existing individuals. Further, we know from the evidence of fossil remains that the animals existing in former periods were very different from those existing now, and that many of the existing forms, such as man, mammals, birds, bony fishes, can only be traced back in the succession of stratified rocks to the later strata or to those about the middle of the series, evidence of their existence in the periods represented by the most ancient strata being entirely absent. Existing types then must have arisen by evolution, by changes occurring in the succession of generations.
These three facts—namely, the limited duration of individual life, the uninterrupted succession of generations, and the differences of the existing animals and plants from those of former geological periods whose remains are preserved in stratified rocks—are sufficient by themselves to prove that evolution has taken place, that the history of organisms has been a process of descent with modification. If the animals and plants whose remains are preserved as fossils, or at any rate forms closely related to these, were not the ancestors of existing forms, there are only two other possibilities: either the existing forms came into existence by new creations after the older forms became extinct, or the ancestors of existing forms, although they coexisted with the older forms, never left any fossil remains. Each of these suppositions is incredible.
In view of these plain facts and their logical conclusion it is curious to notice how Darwin in his Origin of Species constantly mingles together arguments to prove the proposition that evolution has occurred, that the structure and relations of existing animals can only be explained by descent with modification, with arguments and evidence in favour of natural selection as the explanation and cause of evolution. In the great controversy about evolution which his work aroused, the majority of the educated public were ultimately convinced of the truth of evolution by the belief that a sufficient cause of the process of change had been discovered, rather than by the logical conclusion that the organisms of a later period were the descendants of those of earlier periods. Even at the present day the theory of natural selection is constantly confused with the doctrine of evolution. The fact is that the investigation of the causes of evolution has been going on and has been making progress from the time of Darwin, and from times much earlier than his, down to the present day.
Bionomics show that every type must be adapted in structure to maintain its life under the conditions in which it lives, the primary requirements being food and oxygen. Every animal must be able to procure food either of various kinds or some special kind—either plants or other animals; it may be adapted to feed on plants or to catch insects or fish or animals similar to itself; its digestive organs must be adapted to the kind of food it takes; it must have respiratory organs adapted to breathe in air or water; it must produce eggs able to survive in particular conditions, and so on.
One of the most interesting results of the study of the facts of evolution is that each type of animal tends to multiply to such an extent as to occupy the whole earth and adapt itself to all possible conditions. In the Secondary period reptiles so adapted themselves: there were oceanic reptiles, flying reptiles, herbivorous reptiles, carnivorous reptiles. At the present day the Chelonia alone include oceanic, fresh-water, and terrestrial forms. Birds again have adapted themselves to oceanic conditions, to forests, plains, deserts, fresh waters. Mammals have repeated the process. The organs of locomotion in such cases show profound modifications, adapting them to their special functions. One thing to be explained is the origin of adaptations.
It is, however, necessary to distinguish between the adapted condition or structure of an organ and the process by which it became adapted in evolution; two ideas which are often confused. The eye would he equally adapted for seeing whether it had been created in its actual condition or gradually evolved. We have to distinguish here, as in other matters, between being and becoming, and, further, to distinguish between two kinds of becoming—namely, the development of the organ in the individual and its evolution in the course of descent. The word 'adaptation' is itself the cause of much fallacious reasoning and confusion of ideas, inasmuch as it suggests a process rather than a condition, and by biological writers is often used at one time to mean the former and at others the latter. We may take the mammary glands of mammals or organs adapted for the secretion of milk, whose only function is obviously the nourishment of the offspring. Here the function is certain whatever view we take of the origin of the organs, whether we believe they were created or evolved. But if we consider the flipper or paddle of a whale, we see that it is homologous with the fore-leg of a terrestrial mammal, and we are in the habit of saying that in the whale the fore-limb is modified into a paddle and has become adapted for aquatic locomotion. This, of course, assumes that it has become so adapted in the course of descent. But the pectoral fin of a fish is equally 'adapted' for aquatic locomotion, but it is certainly not the fore-leg of a terrestrial mammal adapted for that purpose. The original meaning of adaptation in animals and plants, of organic adaptation to use another term, is the relation of a mechanism to its action or of a tool to its work. A hammer is an adaptation for knocking in nails, and the woodpecker uses its head and beak in a similar way for making a hole in the bark of trees. The wings and the whole structure of a bird's body form a mechanism for producing one of the most difficult of mechanical results, namely, flight. Then, again, there are stationary conditions, such as colour and patterns, or scales and armour, which may he useful in the life of an animal or flower, but are not mechanisms of moving parts like a bird's wing, or secreting organs like mammary glands. Unless we choose or invent some new term, we must define adaptations apart from all questions of evolution as any structures or characters in an organism which can be shown either by their mere presence, or by their active function, to be either useful or necessary to the animal's existence. We must be on our guard against assuming that the word 'adaptation' implies any particular theory or conclusion concerning the method and process by which adaptations have arisen in the course of evolution. It is that method and process which we have to investigate.
On the other hand, when we look primarily at differences of structure we find that not only are there wide and distinct gaps between the larger categories, such as mammals and birds, with few or no intermediate forms, but the actual individuals most closely similar to one another naturally and inevitably fall into distinct groups which we call kinds or species. The conception of a species is difficult to define, and authorities are not agreed about it. Some, like Professor Huxley, state that a species is purely a mental conception, a generalised idea of a type to which actual individuals more or less closely conform. According to Huxley, you cannot lock the species 'horse' in a stable. Others regard the matter more objectively, and regard the species merely as the total number of individuals which possess a certain degree of resemblance, including, as mentioned above, all the forms which may be produced by the same parents, or which are merely stages in the life of the individual. There are cases in which the limits of species or the boundaries between them are indistinct, where there is a graduated series of differences through a wide range of structure, but these cases are the exception; usually there are a vast majority of individuals which belong distinctly to one species or another, while intermediate forms are rare or absent. The problem then is, How did these distinct species arise? How are we to explain their relations to one another in groups of species or genera; why are the genera grouped into families, families into orders, orders into classes, and so on?
There are thus two main problems of evolution: first, how have animals become adapted to their conditions of life, how have their organs become adapted to the functions and actions they have to perform, or, at least, which they do perform? The power of flight, for example, has been evolved by somewhat different modifications in several different types of animals not closely related to one another: in reptiles, in birds, and in mammals. We have no reason to believe that this faculty was ever universal, or that it existed in the original ancestors. How then was it evolved? The second great problem is, How is it that existing animals, and, as the evidence of the remains of extinct animals shows, these that existed at former periods of time also, are divided into the groups or types we call species, naturally classified into larger groups which are subdivisions of others still larger, and so on, in what we call the natural system of classification? The two problems which naturalists have to solve, and which for many recent generations they have been trying to solve, are the Origin of Species and the Origin of Adaptations.